RetrogeneDB ID: | retro_cjac_2131 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:41577545..41578429(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000002277 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRM | ||
Ensembl ID: | ENSCJAG00000002354 | ||
Aliases: | None | ||
Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
Percent Identity: | 92.26 % |
Parental protein coverage: | 98.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GPAASGP-AAIREGWFRET-QLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERD |
GPAAS.P..AIR.GWFRET...WPGQALSLQV.QLLHHR.S.YQ.ILVF.SKTYGN.LVLDGVIQCTERD | |
Retrocopy | GPAASAP<TAIRKGWFRETCSRWPGQALSLQVKQLLHHRHSCYQNILVFHSKTYGNMLVLDGVIQCTERD |
Parental | EFSYQEMIANLPLCSHPNPQKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAVGYS |
EFSYQEMIANLPLCSHPNPQKVLIIGGGD.GVL.EVVKHPSVESVV.CEIDEDVIQVSKKFLPGMAVGYS | |
Retrocopy | EFSYQEMIANLPLCSHPNPQKVLIIGGGDRGVLCEVVKHPSVESVVHCEIDEDVIQVSKKFLPGMAVGYS |
Parental | SSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLD |
SSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMK.ALKEDG.LCCQGECQWLHLD | |
Retrocopy | SSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKMALKEDGILCCQGECQWLHLD |
Parental | LIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQHQVAQMQLKYYNSDVHR |
LIKEM.QFCQSLFPVVAYAYCTIPTYP.GQIGFMLCSKNPSTNFQEPVQPLTQHQVAQMQLK.YNSDVHR | |
Retrocopy | LIKEMWQFCQSLFPVVAYAYCTIPTYPGGQIGFMLCSKNPSTNFQEPVQPLTQHQVAQMQLK-YNSDVHR |
Parental | AAFVLPEFARKALNDVS |
AAF.L.EFARKALNDVS | |
Retrocopy | AAFLLSEFARKALNDVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .20 RPM | 4 .06 RPM |
SRP051959_heart | 0 .46 RPM | 3 .82 RPM |
SRP051959_kidney | 0 .47 RPM | 3 .59 RPM |
SRP051959_liver | 0 .26 RPM | 6 .28 RPM |
SRP051959_lung | 0 .44 RPM | 3 .35 RPM |
SRP051959_lymph_node | 0 .16 RPM | 4 .68 RPM |
SRP051959_skeletal_muscle | 0 .33 RPM | 15 .22 RPM |
SRP051959_spleen | 0 .42 RPM | 4 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002354 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013348 | 1 retrocopy | |
Homo sapiens | ENSG00000116649 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000028297 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Mus musculus | ENSMUSG00000006442 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009532 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000012079 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001892 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000138 | 3 retrocopies |