RetrogeneDB ID: | retro_meug_1330 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold369983:1048..1585(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000007002 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.56 % |
Parental protein coverage: | 61.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SVVQCEIDEDVIQVSKKYLPGMAVGYSSPKLTLHVRDGFEFMQQNQDAFDVIITDSSDPMGPAESLFKES |
SVV.CE.D.D.IQVSKKYLPGMA.GYSS.KLTLHVRD.FEFMQQNQDAFDVIITDSSDPM.P..SLFKES | |
Retrocopy | SVV*CENDDDRIQVSKKYLPGMAMGYSSLKLTLHVRDRFEFMQQNQDAFDVIITDSSDPMSPTKSLFKES |
Parental | YYQLMKTALKDDGILCCQGECQWLHLDLIKEMRHFCKSLFPVVEYAYCTIPTYPSGQIGFMLCSKTPSTN |
YYQLMKTALKD..ILCCQGE.QWLHLDLIKEM.HFCKSLFPV.EY.YC.I.TY..GQIGFML...TPSTN | |
Retrocopy | YYQLMKTALKDNRILCCQGEYQWLHLDLIKEMCHFCKSLFPVMEYVYCAISTYSIGQIGFMLSG*TPSTN |
Parental | FREPVQQLTQEQVEKMNLKYYNSDIHRAAFVLPEFARKA |
F.E..Q.LTQEQVEKMNLKY.N.D....AFVLPEFARKA | |
Retrocopy | FWELTQWLTQEQVEKMNLKYFNLDLCHTAFVLPEFARKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002354 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013348 | 1 retrocopy | |
Homo sapiens | ENSG00000116649 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000028297 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies |
retro_meug_1330 , retro_meug_887,
|
Myotis lucifugus | ENSMLUG00000017585 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016435 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006442 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009532 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000012079 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001892 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000138 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000027689 | 1 retrocopy |