RetrogeneDB ID: | retro_cjac_2338 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:53529364..53530155(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A20 | ||
Ensembl ID: | ENSCJAG00000003285 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 [Source:HGNC Symbol;Acc:1421] |
Percent Identity: | 77.82 % |
Parental protein coverage: | 88.04 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MADQPKPISPLKNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLIREGIMG |
MA..PKPISPL.NLLA.GFG..CLVF.GHPLDT.KV.LQTQP.S..GQPP.YSG.FD....TL.R.G.M. | |
Retrocopy | MANPPKPISPLENLLARGFGALCLVFMGHPLDTAKVQLQTQPLS*SGQPPLYSGIFDSLPITL-RQGTME |
Parental | LYRGMAAPIIGVTPMFAVCFFGFGLGKRLQQKHPEDVLSYPQLFAAGMLSGVFTTGIMTPGERIKCLLQI |
LY.GMAAPIIGVT.MFAVCF.GFGLGK.LQQKHPED.L.YP.LFAAGMLSG..TTGIM.PGE.IKCLL.. | |
Retrocopy | LYQGMAAPIIGVTSMFAVCFSGFGLGKKLQQKHPEDMLRYPPLFAAGMLSGTWTTGIMIPGEPIKCLLPF |
Parental | QASSGETKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSAP |
QASSGET.YTGTL..AKKLY.EFGI.GIY.GTVLTLM.DVPASG.YFMTYE.LKNIFTPEGKRVSELS.P | |
Retrocopy | QASSGETTYTGTLNYAKKLYHEFGIQGIYEGTVLTLM*DVPASGIYFMTYE*LKNIFTPEGKRVSELSVP |
Parental | RILVAG-GIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIRDEGITSL |
.ILVAG.GIAGIFNWAVA.P.DVLKS.FQT..P.KYPN...DVLRE.I.DEG.TSL | |
Retrocopy | *ILVAG<GIAGIFNWAVAVPQDVLKSPFQTESPRKYPNSSVDVLREIIWDEGSTSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .33 RPM | 6 .15 RPM |
SRP051959_heart | 0 .21 RPM | 10 .68 RPM |
SRP051959_kidney | 0 .16 RPM | 12 .56 RPM |
SRP051959_liver | 0 .04 RPM | 12 .35 RPM |
SRP051959_lung | 0 .24 RPM | 7 .40 RPM |
SRP051959_lymph_node | 0 .55 RPM | 7 .47 RPM |
SRP051959_skeletal_muscle | 0 .09 RPM | 6 .73 RPM |
SRP051959_spleen | 0 .38 RPM | 9 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3469 |
Pan troglodytes | retro_ptro_2352 |
Gorilla gorilla | retro_ggor_2341 |
Pongo abelii | retro_pabe_2865 |
Macaca mulatta | retro_mmul_1764 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003285 | 1 retrocopy |
retro_cjac_2338 ,
|
Homo sapiens | ENSG00000178537 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028046 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015418 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013383 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006700 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013892 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014900 | 1 retrocopy | |
Drosophila melanogaster | FBgn0031881 | 1 retrocopy |