>retro_cjac_3770
GTAATTTTTGTATTATCAGTAGAGATGGGTTTCTCCATGTTGGTCAGGCTGGTCTGGAACTCCTGACCCCAGATGATCTT
CCTGCCTCAGCCTCCCAAAATGCTGGGATTATAGGCATGAGCCACTGCACCCAGCGATTATTATTATTATTATTATTGTT
GTTGTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGATGCGATCTCAGCTCACTGCAACCTCCGCCGCC
TGCATTCAAGCAATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGATCACAGGCGTGTGCCACCATGCTCAGCTAATGTTT
GTATTTTTAGGAGAGACAGGGTTTTGCCGTATTGGTGAGACTGGTCTCAAACTGCTGACCTCAGGTAATCCATCCGCC
ORF - retro_cjac_3770 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.97 % |
Parental protein coverage: |
91.39 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LIFVFLVET-GFLHVGQAGLKLFTSGDLPASASQSAVITGVSHCAWPSESNIILLFCFVLFFLRWSFTL- |
| .IFV..VE..GFLHVGQAGL.L.T..DLPASASQ.A.I.G.SHC.........LL....L..LR.S.TL. |
Retrocopy | VIFVLSVEM<GFLHVGQAGLELLTPDDLPASASQNAGIIGMSHCT----QRLLLLLLLLL--LRQSLTL< |
|
Parental | VTQAGVQWCDLGSLQPPPPGFRQFSCLSLPSSWDYRHVPPCPA-FCIFI-EMEFYHVLQVGLELLTSGDP |
| VTQAGVQ.CDL.SLQPPPP.F.QFS.LSLPSSWD.R.VPPC.A..CIF..E..F......GL.LLTSG.P |
Retrocopy | VTQAGVQ*CDLSSLQPPPPAFKQFSFLSLPSSWDHRRVPPCSANVCIFR>ETGFCRIGETGLKLLTSGNP |
|
Parental | PA |
| .A |
Retrocopy | SA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .00 RPM |
0 .93 RPM |
SRP051959_heart |
0 .00 RPM |
1 .19 RPM |
SRP051959_kidney |
0 .00 RPM |
1 .18 RPM |
SRP051959_liver |
0 .00 RPM |
0 .71 RPM |
SRP051959_lung |
0 .00 RPM |
0 .67 RPM |
SRP051959_lymph_node |
0 .00 RPM |
1 .10 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
0 .44 RPM |
SRP051959_spleen |
0 .00 RPM |
0 .99 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_3770 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_3770 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_3770 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
17 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Callithrix jacchus | ENSCJAG00000020022 | 17 retrocopies |
retro_cjac_3346, retro_cjac_3351, retro_cjac_3366, retro_cjac_3378, retro_cjac_3408, retro_cjac_3432, retro_cjac_3434, retro_cjac_3453, retro_cjac_3467, retro_cjac_3585, retro_cjac_3604, retro_cjac_3610, retro_cjac_3671, retro_cjac_3680, retro_cjac_3757, retro_cjac_3770 , retro_cjac_3775,
|