RetrogeneDB ID: | retro_cpor_1027 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:10940469..10940844(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA50 | ||
Ensembl ID: | ENSCPOG00000014169 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.78 % |
Parental protein coverage: | 74.56 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLA-PYRRLGIGTKMLNHVLNICEKDGTFDNIYLH |
.LA.LAYFNDIAVGAVCCRV.HSQ.QKRLYIMTLG.LA.PY.RL.IGTK.LNHVLNICEKDGT..NIYL. | |
Retrocopy | KLAQLAYFNDIAVGAVCCRVGHSQIQKRLYIMTLGGLA>PY*RLEIGTKVLNHVLNICEKDGTLGNIYLY |
Parental | VQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKV-PSGQNADAQKTDN |
VQISNE.AIDFYRKF.FEII.T.K.Y.K.I.P..AHVL.KNL.V...G..AD.QKT.N | |
Retrocopy | VQISNEAAIDFYRKFDFEII*T-KSY*KKIKPVEAHVLLKNLSV<ALG*FADVQKTNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .87 RPM |
SRP017611_liver | 0 .00 RPM | 29 .73 RPM |
SRP040447_lung | 0 .00 RPM | 26 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 82 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014169 | 6 retrocopies |
retro_cpor_1027 , retro_cpor_1028, retro_cpor_1199, retro_cpor_1200, retro_cpor_217, retro_cpor_480,
|
Gorilla gorilla | ENSGGOG00000006589 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000004023 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006467 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011197 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009780 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009438 | 1 retrocopy |