RetrogeneDB ID: | retro_cpor_1085 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_45:14823785..14824175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BCAS2 | ||
Ensembl ID: | ENSCPOG00000020532 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.18 % |
Parental protein coverage: | 58.22 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SSGQKNDITAWQECV-NNSMAQLEHQAVRI-ENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHI |
.SGQ.NDI..WQECV...S.A.LEH.......NL..MS..GCNAWKVY.ENLVHMIE.AQKEL.K.RKHI | |
Retrocopy | ASGQENDIIVWQECV<DSSVAPLEHRIENL<DNLKSMSPCGCNAWKVYHENLVHMIESAQKELRK*RKHI |
Parental | QDLNWQRKNMQLTAGSKLRE-MESNWVSLVSKNYEIERTIVQLENEIYQIKQQQGEANKENIRQ |
..LNW.RKNM.LTAG.K.RE.ME.N.VSLVS.N.EIE...V.LENEI.QIKQQQG........Q | |
Retrocopy | *ALNW*RKNMELTAGLKPRE<MEPNGVSLVSQNWEIEKATV*LENEIHQIKQQQGDRGRQKTSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .33 RPM |
SRP017611_liver | 0 .00 RPM | 23 .68 RPM |
SRP040447_lung | 0 .00 RPM | 15 .64 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 16 .98 RPM |