RetrogeneDB ID: | retro_cpor_1186 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_54:10017507..10018471(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UAP1 | ||
Ensembl ID: | ENSCPOG00000004568 | ||
Aliases: | None | ||
Description: | UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457] |
Percent Identity: | 60.06 % |
Parental protein coverage: | 62.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 8 |
Parental | LFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSHKT-LFQIQ-AERILKLQLLAE-KYYGNKCIIP |
LFQISQNK.AV.LLA.GQ....G.AYP....DV...SHKT..F..Q.AE..LKLQLL....Y.G.K.I.P | |
Retrocopy | LFQISQNKGAVPLLADGQRATVGMAYPGRKCDVVSLSHKT<IFRFQ<AEHVLKLQLLSK<SYHGFKWISP |
Parental | WYIMTSGRTMEATKEFFTKHKYFG-LKKENIIFFQQGMLPAMSFDGKII-LEEKNKVSMAPDGNGGLYRA |
W....SGR..E.TKEFF.KHKYFG.LKKEN.I.F.QGMLPAMSF.GK...LEEKNK.SMAPDGN.....A | |
Retrocopy | W*VEASGRKIEETKEFFIKHKYFG<LKKENVIYFDQGMLPAMSFMGKLL<LEEKNKISMAPDGNEXXXXA |
Parental | LAAQNIVEDMEQRGIWCIHVYCVDNILVKVADPRFIGFCIQKG-ADCGAKVVEK-TNPTEPVGVVCRVDG |
LAAQN.VED..Q.G.WC.....VD..LVKV..P..I.F...KG.ADCGA.V.E...N.TEP.GVVC...G | |
Retrocopy | LAAQNMVEDLYQKGTWCTCICYVDDALVKV-KPMVIEFHVEKG<ADCGAMVIEE<ENTTEPGGVVCSMNG |
Parental | VYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTIPFLRDVVNVYEPQLQHHVAQKKIPYVDSRGEL |
...VVE.S.ISLAT.Q.RSSDG..LF..G.I.NH.F....LRD.V.V.EPQL..H.A..KIPYVDS.GEL | |
Retrocopy | G*WVVE*SKISLATSQVRSSDGQVLFCLGRITNHIFIVLCLRDAVGVDEPQL*RHLAHRKIPYVDSWGEL |
Parental | IKPDKPNGI-KMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPT |
I.PDK..GI.K..K...DIFQ.A.K...YE.L..D.FSPLK.ADS...KDNP. | |
Retrocopy | IMPDKSCGI<KLPKVASDIFQIAEKLALYEGLSKDGFSPLKHADSHSVKDNPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 59 .25 RPM |
SRP017611_liver | 0 .00 RPM | 29 .25 RPM |
SRP040447_lung | 0 .00 RPM | 36 .92 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 25 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004264 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004568 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024661 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019514 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002926 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002725 | 3 retrocopies |