RetrogeneDB ID: | retro_cpor_1476 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:39779987..39780795(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DTWD1 | ||
Ensembl ID: | ENSCPOG00000003461 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.59 % |
Parental protein coverage: | 89.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EDPLQNLCLASQEILQKAQRSGRSRCVKCGGSRMFYCYTCYVPVENVPGGQIPLVKLPLKIDIIKHPNET |
ED..QN..L.SQEILQKAQ.SGRS.CVKC.G.RM..CYTC.VPVENV..GQIPL.KL.LK.DIIKHPN.T | |
Retrocopy | EDLPQNSFLESQEILQKAQHSGRSKCVKCSG*RMCCCYTCSVPVENVTLGQIPLGKLSLKTDIIKHPNVT |
Parental | DGKSTAIHAKLLAPEFVNIYTYPCIPEYEEKDHEVALIFPGPQSVSIKDI-SFHLQKRIQNKGKTDDLER |
DGKSTA..AKLLAP.FV.IYTYP.I..YE.KD.EV.LIFPGPQS.SI....S......IQNKGKT..LER | |
Retrocopy | DGKSTAVLAKLLAPGFVSIYTYPYILQYEAKDLEVTLIFPGPQSISIRYFFSSXXXXXIQNKGKTNNLER |
Parental | P-SFKRKK-TEEQERCDLNDSKCKGATLKRVIFIDSTWNQTNKIVSDERLQGLLQVELKTRKTCFWRHQK |
P..FK.KK.T.E.E.CDLND..C...TLKRV.F.DSTWNQTN..V......G...VELKTRK..FW.HQK | |
Retrocopy | P<TFKHKK<TKEEENCDLNDGRCPVRTLKRVVFMDSTWNQTNTTVTESSCRGCYKVELKTRKIFFWCHQK |
Parental | GKPETFLSTIEAIYYFLVDYHTDILKEKYKGQYDNLLFFYSFMYQLIKNAKYSGTKQTTKLT |
GK..TFLST.EAIY.FLVDY..D.LKEK.KGQYDNLLFFYSFMYQ..KNAKYSG.KQTTKLT | |
Retrocopy | GKSDTFLSTVEAIYCFLVDYYADLLKEKHKGQYDNLLFFYSFMYQFMKNAKYSGAKQTTKLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .57 RPM |
SRP017611_liver | 0 .00 RPM | 9 .58 RPM |
SRP040447_lung | 0 .00 RPM | 7 .62 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 9 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014926 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003461 | 2 retrocopies |
retro_cpor_1476 , retro_cpor_250,
|
Homo sapiens | ENSG00000104047 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027921 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006167 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013291 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002951 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006464 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007058 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008358 | 2 retrocopies |