RetrogeneDB ID: retro_ogar_499

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873522.1:46021198..46021694(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DTWD1
• Ensembl ID: ENSOGAG00000013291
• Aliases: None
• Description: DTW domain containing 1 [Source:HGNC Symbol;Acc:30926]

Sequence

>retro_ogar_499
CTTTCGTTGGAGATGGACATCATTAAATATCCAAATGAAACAGATGGCAGAGGTTCTGCTATACCTGCAAATCTCTCAGC
TCCTGAATTTGTAAACATTTACACGTATCTTTTAATTTCAGAACATGAAGGAAAGGATCATGAAGGCGTACTTGTTTTTC
ATGGACCTCAGTCTATCTCAATGGAAGATATTTCTTTTCATCTGCAGAAAAGGATTCACAATAATAGTGGAGGCAAACGG
GATGAACCCACCGTGCCATCTTTTAAACACAAGGAACCCGACGTACAGACAGACTGTGATTTGAATGGAGCAAATACAAA
GGCACAACACGGACCAAAGTGATATTTAAGGGGAACACCTGGCACCAAACAAAATATCCACTGATGAGCAACTTCAAGGG
TTGTTACAAGCTGAATTGAAAACAAGAAGAACTTGCTTTTGGCGCCATCAAAAAGAAGAGCCAGATACTTTGCTATCCGC
AACTGAAGCCATTTAC

Alignment

ORF - retro_ogar_499 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.17 %
• Parental protein coverage: 55.48 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LPLKIDIIKHPNETDGKSTAIHAKLLAPEFVNIYTYPCIPEYEEKDHEVVLVFPGPQSISIKDISFHLQK
          L.L..DIIK.PNETDG...AI.A.L.APEFVNIYTY..I.E.E.KDHE.VLVF.GPQSIS..DISFHLQK
Retrocopy LSLEMDIIKYPNETDGRGSAIPANLSAPEFVNIYTYLLISEHEGKDHEGVLVFHGPQSISMEDISFHLQK

Parental  RIQHNVRGKNDDPDMPSFKRKKTEDQEDYDLND-SKRKGTTLKKVIFIDSTWNQTNKIITDERLQGLLQV
          RI..N..GK.D.P..PSFK.K....Q.D.DLN..SK.KGTT..KVIF...TW.QT.K........G....
Retrocopy RIHNNSGGKRDEPTVPSFKHKEPDVQTDCDLNG<SKYKGTTRTKVIFKGNTWHQT-KYPLMSNFKGCYKL

Parental  ELKTRKTCF-WRHQKGKPDTFLSTIEAIY
          ..K.....F.WRHQK..PDT.LS..EAIY
Retrocopy N*KQEELAF<WRHQKEEPDTLLSATEAIY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_499 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014926	1 retrocopy	retro_cfam_2081,
Cavia porcellus	ENSCPOG00000003461	2 retrocopies	retro_cpor_1476, retro_cpor_250,
Homo sapiens	ENSG00000104047	1 retrocopy	retro_hsap_2846,
Gorilla gorilla	ENSGGOG00000027921	1 retrocopy	retro_ggor_1973,
Nomascus leucogenys	ENSNLEG00000006167	1 retrocopy	retro_nleu_1598,
Otolemur garnettii	ENSOGAG00000013291	1 retrocopy	retro_ogar_499 ,
Ochotona princeps	ENSOPRG00000002951	2 retrocopies	retro_opri_136, retro_opri_949,
Pongo abelii	ENSPPYG00000006464	2 retrocopies	retro_pabe_2355, retro_pabe_2356,
Pan troglodytes	ENSPTRG00000007058	1 retrocopy	retro_ptro_1928,
Vicugna pacos	ENSVPAG00000008358	2 retrocopies	retro_vpac_509, retro_vpac_530,