RetrogeneDB ID: | retro_cpor_429 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_15:177458..178399(-) | ||
Located in intron of: | ENSCPOG00000004451 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NARS | ||
Ensembl ID: | ENSCPOG00000013227 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.11 % |
Parental protein coverage: | 57.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | AELYVSDREGDDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQKENERWDVISKSQMKNIKKLWHRE |
AE.YV.DREGDDATGDGTKEK.FK.GLKALMTVGKEPFPTIYVDSQKENERWDVISKSQMKNIKK.WHRE | |
Retrocopy | AEMYVLDREGDDATGDGTKEKQFKIGLKALMTVGKEPFPTIYVDSQKENERWDVISKSQMKNIKKMWHRE |
Parental | QMKTESQEKREAEDSLRREKNLEEAKKISIKKDPSLPEPKCVKIGALEGYRGQRVKVFGWVHRLRRQGKN |
QMKTESQEKREAEDSLRREKNLEEAKKISIKKDPSLPEPKC.KIGALEGYRG.RVKVFGWVHRL.RQGKN | |
Retrocopy | QMKTESQEKREAEDSLRREKNLEEAKKISIKKDPSLPEPKCMKIGALEGYRGRRVKVFGWVHRLCRQGKN |
Parental | LMFLVLRDGTGYLQCVLSDDLCLCYNGVVLSTESSVAVYGTLNLIPKGKQAP-GGHELSCDFWELIGLA- |
LMFLVL.DGTGYLQCVLSDDLCLCYNGV.LSTES.VAVY.TLNLIPKGK.AP.GGHELSCDFWELIGLA. | |
Retrocopy | LMFLVL*DGTGYLQCVLSDDLCLCYNGVDLSTESTVAVYETLNLIPKGK*AP>GGHELSCDFWELIGLA< |
Parental | PAGGADNLINEESDVDVQLNNRHMMIR-GENMSKILRARSMITACFREHFFDRGYYEVTPPTLVQTQVEG |
PAGGADNLIN.ESD.DVQLNNRHMMIR.GENMSKILRARS.IT.CF.EHFFDRGYYEVT.PTLVQTQVE. | |
Retrocopy | PAGGADNLINKESDIDVQLNNRHMMIR<GENMSKILRARSVITTCFQEHFFDRGYYEVTSPTLVQTQVED |
Parental | GSTLFKLDYFGEEAFLTQSSQLYLETCLPSLGDVFCI |
GSTLFKLDYFGE.AFLTQSSQLYLETCLPSLGD.FCI | |
Retrocopy | GSTLFKLDYFGEQAFLTQSSQLYLETCLPSLGDMFCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .52 RPM | 119 .06 RPM |
SRP017611_kidney | 0 .84 RPM | 93 .07 RPM |
SRP017611_liver | 0 .22 RPM | 58 .06 RPM |
SRP040447_lung | 0 .15 RPM | 256 .90 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 43 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003837 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013227 | 3 retrocopies |
retro_cpor_1441, retro_cpor_429 , retro_cpor_736,
|
Loxodonta africana | ENSLAFG00000000559 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000774 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016302 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002118 | 1 retrocopy |