RetrogeneDB ID: | retro_meug_2019 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold80156:11537..12140(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000000774 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.29 % |
Parental protein coverage: | 68.97 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | TCLPALGDVFCIAQSYRAEQSRTRRHLAEYTHIEAECPFLTFEDLLTRVED-LVCDVVDRILKS-PAASL |
TC.PALG.VFCI.QS.R.EQSRT.RHLAEY...E...P.LTF..LL...ED.L.CDVVDRILK...AA.L | |
Retrocopy | TCVPALGVVFCIVQSPREEQSRTQRHLAEYSLTETDYPLLTFDNLLNHLED<LICDVVDRILKY<SAAVL |
Parental | LYELNPTFTPPKR-PFKRMNYSDAIVWLKEHDVKKEDGTYYEFGEDIPEAPERLMTDTINEPILLCRFPA |
.Y..N.TF.PPKR..FK.M.YSDA.VWLKE.D.K.EDGTYY..GE.IPEAPE.LMTDT.NEPILLC.FP. | |
Retrocopy | *YDFNLTFVPPKR<TFKWMKYSDALVWLKEFDIKMEDGTYYVLGENIPEAPEGLMTDTMNEPILLC*FPI |
Parental | EIK--SFYMPRCPEDSRLTESVDVLMPNVGEIVGGSMRIWDGEELLKGYKREGIDPTPYYWYTDQ |
EIK....YM..CPE.S.LTE.V.VLM.N.GEIVGGSM.IWD...LLK..KREG.D.TPY.WYTDQ | |
Retrocopy | EIKYIYIYMQ*CPENSWLTEPVRVLMANFGEIVGGSMNIWDSK*LLKEFKREGVDSTPY*WYTDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003837 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013227 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000000559 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000774 | 1 retrocopy |
retro_meug_2019 ,
|
Otolemur garnettii | ENSOGAG00000016302 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002118 | 1 retrocopy |