RetrogeneDB ID: | retro_cpor_819 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_296:103682..104569(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMU1 | ||
Ensembl ID: | ENSCPOG00000006212 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.87 % |
Parental protein coverage: | 57.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPD |
MS.EI.SSDVIRLIMQYLKEN.LH..LATLQEETTV.LN.V.SIESFVA.INS.HWDTVLQAIQSL.L.D | |
Retrocopy | MSMEINSSDVIRLIMQYLKENGLHQTLATLQEETTVYLNKVSSIESFVAEINSSHWDTVLQAIQSLRLLD |
Parental | KTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEK |
KTLIDLYEQVVL..IEL.EL..ARS.LRQTDPM.MLKQ..PE.YIHLENLL.RSYFD..EAYP.GSSKEK | |
Retrocopy | KTLIDLYEQVVLQWIELCELDVARSILRQTDPMMMLKQALPEQYIHLENLLVRSYFDLGEAYPQGSSKEK |
Parental | RRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIK |
.RA.I.QALAGEVSVVPPS.L.ALL.QALKW..HQGLLP.G.TIDLF..KAA..DV.EEKFPTQLS.HIK | |
Retrocopy | KRAVIVQALAGEVSVVPPSHLLALL*QALKWRHHQGLLPCGVTIDLFHSKAAAQDV-EEKFPTQLSGHIK |
Parental | FGQKSHVECARFSPDGQYLVTGSVDGFI-EVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEML |
FGQKSHVECARFS.D.QYLVTGS.DGF..EVWNFT.GK..KDLKY.A.DNFMMMD...LCM.FSR..E.L | |
Retrocopy | FGQKSHVECARFSADCQYLVTGSLDGFL<EVWNFTNGKLKKDLKYLAHDNFMMMDGTILCM*FSRISEIL |
Parental | ATGAQDGKIKVWKIQSGQ |
ATGAQDGKIK.WKIQSGQ | |
Retrocopy | ATGAQDGKIKMWKIQSGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 66 .37 RPM |
SRP017611_liver | 0 .00 RPM | 47 .01 RPM |
SRP040447_lung | 0 .00 RPM | 53 .47 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 35 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006212 | 1 retrocopy |
retro_cpor_819 ,
|
Cavia porcellus | ENSCPOG00000010747 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014790 | 1 retrocopy | |
Homo sapiens | ENSG00000122692 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014802 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016097 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003439 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011389 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019140 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020853 | 1 retrocopy |