RetrogeneDB ID: | retro_cpor_12 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_87:6749006..6749981(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000005713 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR5 | ||
Ensembl ID: | ENSCPOG00000014790 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.66 % |
Parental protein coverage: | 93.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI |
SSA......P.KPNYALK.TL.GHT.AVSSVKFSP.GEWLASSSADK.I.IWGAYDG..EKT..GH.L.I | |
Retrocopy | SSAWRHQEMPTKPNYALKLTLEGHTEAVSSVKFSPDGEWLASSSADKVIIIWGAYDGNYEKTLYGHNLEI |
Parental | SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT |
SDVAWSSDS..LVSASDDKTLKIWDV.SGKCLKTLKGH..YVFCCNFNP.S.LIVSGSFDESV.IW.VKT | |
Retrocopy | SDVAWSSDSSCLVSASDDKTLKIWDVRSGKCLKTLKGHNDYVFCCNFNPASTLIVSGSFDESVKIWEVKT |
Parental | GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL |
GKCLKTL.AHSDPVSAVHFN..GSLIVS.SYDGLCRIWD.ASGQCLKTL..DDN.PVSFVKFSPNGKYIL | |
Retrocopy | GKCLKTLTAHSDPVSAVHFNSTGSLIVSGSYDGLCRIWDAASGQCLKTLAVDDNLPVSFVKFSPNGKYIL |
Parental | AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH |
..TLD.TLKLWDYS.G.CLKTY.GHKNEKYCIF.NFSVTGGKWIVSGSEDNLVYIW..QTKEIVQKLQGH | |
Retrocopy | ISTLDSTLKLWDYSRGRCLKTYSGHKNEKYCIFSNFSVTGGKWIVSGSEDNLVYIWSIQTKEIVQKLQGH |
Parental | TDVVISTACHPTENIIASAALENDKTIKLWKSD |
TDVVI..ACHPTENIIASAALENDKTIKLW.SD | |
Retrocopy | TDVVIAAACHPTENIIASAALENDKTIKLWMSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .07 RPM | 18 .64 RPM |
SRP017611_kidney | 3 .98 RPM | 23 .87 RPM |
SRP017611_liver | 3 .92 RPM | 12 .32 RPM |
SRP040447_lung | 2 .98 RPM | 27 .16 RPM |
SRP040447_skeletal_muscle | 1 .35 RPM | 11 .88 RPM |