RetrogeneDB ID: | retro_cpor_922 | ||
Retrocopy location | Organism: | Guinea Pig (Cavia porcellus) | |
| Coordinates: | scaffold_35:3771409..3771672(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ZNRF2 | ||
| Ensembl ID: | ENSCPOG00000027612 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_cpor_922
TTTGAAGGATTTAAGTGCCCTGTGTGCTCAAAATTTGTACCCTCATTTGAAATGGATTTACATCTTGTGATGTGTTTAAC
AAAGCCAAGAATAATCTATACTGTGGATGTGCTGAGTAAAGGTGCTGGGGAATCTGCAATATGCCTTGAAGAATTGCAGC
AGGCAAATTCTATAGTATGACTACTTGCTTGTGTATGTATCATAAAGGCTGCATAGATGAATGGTTTGAAGGAAATGGAT
CTTGCAATGAGCACCCTTCAGAT
ORF - retro_cpor_922 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.78 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | FLGFKCPVCSKFVPSDEMDLHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARL-PCLCIYHK |
| F.GFKCPVCSKFVPS.EMDLHLVMCLTKPRI.Y..DVLSK.AGE.AICLEELQQ...I..L..CLC.YHK | |
| Retrocopy | FEGFKCPVCSKFVPSFEMDLHLVMCLTKPRIIYTVDVLSKGAGESAICLEELQQANSIV*L<TCLCMYHK |
| Parental | GCIDEWFEVNRSCPEHPSD |
| GCIDEWFE.N.SC.EHPSD | |
| Retrocopy | GCIDEWFEGNGSCNEHPSD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .81 RPM |
| SRP017611_kidney | 0 .00 RPM | 4 .71 RPM |
| SRP017611_liver | 0 .00 RPM | 11 .32 RPM |
| SRP040447_lung | 0 .00 RPM | 1 .61 RPM |
| SRP040447_skeletal_muscle | 0 .00 RPM | 0 .80 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_922 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_922 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Cavia porcellus | ENSCPOG00000027612 | 1 retrocopy |
retro_cpor_922 ,
|
| Felis catus | ENSFCAG00000026521 | 1 retrocopy |