RetrogeneDB ID: | retro_cpor_944 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_36:2905439..2905827(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATG12 | ||
Ensembl ID: | ENSCPOG00000007187 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.62 % |
Parental protein coverage: | 77.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | SVLQLPPSAVAAGGEGLGELSPETATPEP-PSAAVSPGTEEPAGDTKKKI-DVLLKAV-GDTPI-MKTKK |
S.LQL..SA..AG....G..........P..SA.....TEEP...T..KI.D.L.KA..GDTP..M.TK. | |
Retrocopy | SALQLILSAETAG----GKVLGDLSLKQPHKSALLLLQTEEPVSGTPRKI>DILVKAA<GDTPK<METKT |
Parental | WAVERTRTIQGLIDFIKKFLK-LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAW |
WAVE...TIQGL.DFI..F...LVASE.LFI.VNQSF.PSPD..VG.LY.CF...GK....YCKSQ.W | |
Retrocopy | WAVEQRLTIQGLTDFI*QFFN<LVASE*LFIFVNQSFGPSPDKKVGILYRCFSNGGKRIFVYCKSQIW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .77 RPM |
SRP017611_liver | 0 .00 RPM | 19 .28 RPM |
SRP040447_lung | 0 .00 RPM | 13 .67 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 9 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004464 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007187 | 2 retrocopies |
retro_cpor_865, retro_cpor_944 ,
|
Equus caballus | ENSECAG00000012452 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018837 | 1 retrocopy | |
Homo sapiens | ENSG00000145782 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016888 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000015307 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002759 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015699 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000017154 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000157 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011755 | 1 retrocopy |