RetrogeneDB ID: retro_dmel_26

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2L:15979571..15980120(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0028858
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG8800
• Ensembl ID: FBgn0033408
• Aliases: None
• Description: None

Sequence

>retro_dmel_26
ATGTCGAAGCCGACAACCCTAAAGGACGCATTGGCCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGA
AATTGGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAATTCCCTTACCGAGTGCCAAAAGCTCA
GCTTGTCCTCAAATATGATTGAGAAGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCACGTAAC
AATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCTGGAGGAATTGTGGGTCAGCTACAACAACATCGAGAA
GACCAAGCCCCTGGAATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAGGACTGGACGGAGTTCA
TGCGCATGGGTGTTCCACCAAATCTCAGCGAGATCACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCC
TTCACTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAGCCTGTCATTCGTTAG

Alignment

ORF - retro_dmel_26 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.35 %
• Parental protein coverage: 96.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSKATTIKEALKRWEEREQQNSLTAKVIDLQFQWPPIEKMDSTLGTLVQCERISMSTNMIEKIFGLSGMK
          MSK.TT.K.AL..WE.R..Q...TA..I.LQFQ.PPIEKMD..L..L..C...S.S.NMIEKI.G.SGMK
Retrocopy MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTECQKLSLSSNMIEKITGISGMK

Parental  CLKVLSLSRNYIKQISGLEAVAETLEELWLSYNLIEKIKGLTGLKCLKVLYISNNLIKDWSEFNRLAEIE
          .LKVLSL.RN..K...G.E..A.TLEELW.SYN.IEK.K.L...K.L.V.YIS.N.IKDW.EF.R.....
Retrocopy NLKVLSLARNNLKTLNGIEPLADTLEELWVSYNNIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGVPP

Parental  SLEDLVVVGNPLSEGLDEPTWRAECIKRLPTIRKLDGEPVV
          .L.....VGNPL.E..D.....AE...RLP...KLDGEPV.
Retrocopy NLSEITFVGNPLNENMDQSAFTAEAVRRLPNMKKLDGEPVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_26 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_26 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015930	1 retrocopy	retro_btau_1190,
Cavia porcellus	ENSCPOG00000010655	1 retrocopy	retro_cpor_25,
Drosophila melanogaster	FBgn0033408	1 retrocopy	retro_dmel_26 ,