RetrogeneDB ID: | retro_dmel_31 | ||
Retrocopy location | Organism: | Fruit fly (Drosophila melanogaster) | |
| Coordinates: | 2L:10693031..10694060(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | FBgn0032285 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Cpr47Ef | ||
| Ensembl ID: | FBgn0033603 | ||
| Aliases: | None | ||
| Description: | Cuticular protein 47Ef [Source:FlyBase gene name;Acc:FBgn0033603] |
Retrocopy-Parental alignment summary:
>retro_dmel_31
ATGCGTCTGTTTATAGTGCTGAGTGTTTGTGTGGCGTTAGCTTCCGCCGGAGGTTACGGCGGTGGAGGCGGAGGTGGTGG
TGGTGGACACGCCGGAGCATCCGCTTCCTCGTCCGCTTCTGCCGGTGCGATTGGCGGCGGTGATGGAGGCGGTAAGCTCG
GCGGAGGTTATGGATCTGGTGGTCACGGTTCTGGAGGACTTGGATCTGGCGGTTTCGGCTCTGGCGGTGATTTAGGACTT
GGAGGCGGCGGTGTCGGAGGAGGTCCCTTCGCAGGTGGCCATGCTGGCGGTGGAGTGATCTCCGGCGGAGGTCATTCTGG
AGGTGGAGGCGGATTCGGTGGCGGTCCCGGATTCGGATCAGGTGGTCATTCCGGTGGAGGAATCGGTGACGGCCCTGGAT
TTGGATCAGGTGGATATTCCGGAGGAGGTGGCGGAATCGGCGGTGGAGGTGGCCATTCTGGTGGAGGTAGCGGAATCGGT
GGCGGCCCTGGATTTGGTGGCGGAATCGGCGGCGGAGGTGGCCATTCTGGTGGAGGCGGTGGAATCGGCGGCGGTCCTGG
ATTTGGTGGAGGAATCGGCGGATCCGGTAGCTCTGCATCATCTTCAGTTGGAGTTATTGGTGGAGGTCATGGCGGCGGAG
GTCACGGCGGAGGAGGCTTCGGACCTGGTGGAGGAGGTGGAGGAGGCTTCGGACCAGGTGGAGGAGGCTTTGGACCCGGC
ATTGGAGGTGGCGGTGGAGGCTTTGGCCCCGGCATTGGAGGCGGATCCGGTGGTGGACACTTTGGTGGTGGTCTTAGCCA
CAAGCACAAAGGCCATGGAGGCGGAGGCGGCTTCAAAGGCGGATACGGCGGCGGCGGCGGCGGAGGCGGAGGCGGCGGTG
GCGGCTACGGAATTGGACCTGCAGTCTCCTTAGGTGGCGGACCAGGCGGTGGTGGTAGCTACGGAGGTGGCTACGGAGGT
GGCTCCGGAGCCTCTGCTTCAGCCAGTGCCAGTGCCTCAGCAGGAGCAGGCGGCGGCTATCATGGCTAG
ORF - retro_dmel_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.06 % |
| Parental protein coverage: | 54.24 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GAGGGGGGGSGYGGGSGFGGGGAGGGSGGGGGGAGGGGGYGSGGGSGRGGAPGGPGAPGGGGFGGQGGGG |
| G.GGGGGGG.G...G.........G..GGG.GG...GGGYGSGG....G...GG.G..G..G.GG.G.GG | |
| Retrocopy | GYGGGGGGGGGGHAGASASSSASAGAIGGGDGGGKLGGGYGSGGHGSGGLGSGGFGSGGDLGLGGGGVGG |
| Parental | GYGGAGGGAGRGGSPGGPGSPGGGGFGGQGGAGGGYGGGGGGGRGGGGAPGAPGSPGGGGFGGQGGGGGF |
| G...AGG.AG.G...GG..S.GGGGFG..GG.G.G.GG..GGG.G.G...G..G..GGGG.G..GGGG.. | |
| Retrocopy | G-PFAGGHAGGGVISGGGHSGGGGGFG--GGPGFGSGGHSGGGIGDGPGFGSGGYSGGGG-GIGGGGGHS |
| Parental | GGGGGRGGAPGAPGSPGGGG--YGGQGGAGGGYGGGGGRGGGGAPGAPGAPGSPGGGGFGGQGGGGGFGG |
| GGG.G.GG.PG..G..GGGG...GG.GG.GGG.G.GGG.GG.G...A....G..GGG..GG..GGGGFG. | |
| Retrocopy | GGGSGIGGGPGFGGGIGGGGGHSGGGGGIGGGPGFGGGIGGSGS-SASSSVGVIGGGHGGGGHGGGGFGP |
| Parental | GGGRGGAPGAPGGGGGYG-GGAGRGGAPGAPGSPGGGGFGGQGGGGGFGAGGGRGGAGGAPGGPGSPGGP |
| GGG.GG..G..GGG.G.G.GG.G.G..PG..G..GGG.FGG.......G.GGG.G..GG..GG.G..GG. | |
| Retrocopy | GGGGGGGFGPGGGGFGPGIGGGGGGFGPGIGGGSGGGHFGGGLSHKHKGHGGGGGFKGGYGGGGGGGGGG |
| Parental | GYGGGAGGPGGAGGRPGGPGLPGNQYVPPAAGGGAPGSPGRPGSGGVPG |
| G.G.G.G.....GG.PGG.G..G..Y.....G.GA..S.....S.G..G | |
| Retrocopy | GGGYGIGPAVSLGGGPGGGGSYGGGY---GGGSGASASASASASAGAGG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_31 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_31 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Drosophila melanogaster | FBgn0033603 | 1 retrocopy |
retro_dmel_31 ,
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