RetrogeneDB ID: retro_dmel_4

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2R:17644995..17645346(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0034658
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG6852
• Ensembl ID: FBgn0036820
• Aliases: None
• Description: None

Sequence

>retro_dmel_4
ATGGGTACGGTGGTCAGCACCCTGCAGCGACCCACTCTCTACGTGAGCATGGACAGCTCGCATGCGCAGTTCGTGCGGGA
CACAATCAGCGGCAACAAGGTGGTGATCTTTAGCAAGAGCTACTGCCCCTACTGCAGCATGGCCAAGGAACAGTTCCGAA
AGATCAACGTCAAGGCAACGGTGATTGAGCTGGACCAGCGGGATGATGGCAACGAGATCCAGGCGGTTCTTGGCGAGATG
ACGGGCTCGAGGACCGTTCCACGTTGCTTCATCGATGGCAAGTTCGTGGGTGGCGGCACCGACGTGAAGCGGCTATACGA
ACAGGGCATACTGCAGAAGTATTTTCAGTGA

Alignment

ORF - retro_dmel_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.1 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGAVGSALRSPI--VDMSTKQAKFVENTIASNKVVIFSKTYCPYCTMAKEPFKKLNVDATIIELDGNPDG
          MG.V.S.L..P...V.M....A.FV..TI..NKVVIFSK.YCPYC.MAKE.F.K.NV.AT.IELD...DG
Retrocopy MGTVVSTLQRPTLYVSMDSSHAQFVRDTISGNKVVIFSKSYCPYCSMAKEQFRKINVKATVIELDQRDDG

Parental  NEIQAVLGEITGARTVPRVFIDGKFIGGGTDIKRMFETGALQKYFQ
          NEIQAVLGE.TG.RTVPR.FIDGKF.GGGTD.KR..E.G.LQKYFQ
Retrocopy NEIQAVLGEMTGSRTVPRCFIDGKFVGGGTDVKRLYEQGILQKYFQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_4 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_4 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015972	1 retrocopy	retro_btau_543,
Choloepus hoffmanni	ENSCHOG00000007274	1 retrocopy	retro_chof_2375,
Callithrix jacchus	ENSCJAG00000008562	1 retrocopy	retro_cjac_643,
Equus caballus	ENSECAG00000015376	1 retrocopy	retro_ecab_169,
Felis catus	ENSFCAG00000025580	1 retrocopy	retro_fcat_733,
Myotis lucifugus	ENSMLUG00000015734	1 retrocopy	retro_mluc_1008,
Tupaia belangeri	ENSTBEG00000011216	1 retrocopy	retro_tbel_1638,
Drosophila melanogaster	FBgn0036820	1 retrocopy	retro_dmel_4 ,