RetrogeneDB ID: | retro_dmel_46 | ||
Retrocopy location | Organism: | Fruit fly (Drosophila melanogaster) | |
| Coordinates: | 2L:13595551..13596997(-) | ||
| Located in intron of: | FBgn0259984 | ||
Retrocopy information | Ensembl ID: | FBgn0028513 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | dmGlut | ||
| Ensembl ID: | FBgn0010497 | ||
| Aliases: | None | ||
| Description: | Dietary and metabolic glutamate transporter [Source:FlyBase gene name;Acc:FBgn0010497] |
Retrocopy-Parental alignment summary:
>retro_dmel_46
ATGGCGGATGCAAAAGAGCAACCAGAATGGGGCATAAAGCTCTCAAAATTCTTTGTATTACCCCAACGCTGGATTCTGGC
CATCATGGGATTCTTTGCCATCTTTAATGCATACACCATGCGGATATGTCTATCCCAGGCCATCACAGTGCTGGTGGTGA
AGAGGAATTATACTATTTTCCACACCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTCGAGGGA
GGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGCCTCTTTCTACATTGGCTATATTGTAACTCATTTGCC
TGGTGGAATTCTGGCTGACAAATTTGGCGGAAAGTGGACACTGAGTCTTGGAATCTTTTTTACGGCTATTTTTACATTGC
TGACACCCGTCTGCATTGTTTATGGCGGTGCCGATGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACC
ACTTTCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGAGGAATGCTGGGAGCCCTTGTACTCGG
CGGTGGTCAGATGGGTAGTATTGCTGGTAACATTATTTCTGGCTATGTACTCAGCTCCATGGACTGGCCATGGGTATTCT
ATGTTTTTGCGATCATCGCCCTTGTCTGGTTTGTCGTTTTCACGCTAGTGTGCTTTAGCAGTCCATTCACTCATCCATAT
ATCAAGCCAGAGGAACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAGCCGAAGACACCATTTTTTGC
CATATTAACAAGCATACCCATGTGGGCATTGATCAGTGCTCAAATCGGACACGATTGGGGTTTCTATATTATGGTCTCCT
ACCTGCCAAAGTATATGTCGGATGTGCTGCGGTTTTCGATTAAGTCGAATGGTCTCTACTCCTCACTGCCCTACGTTACC
ATGTGGATCATGTCGCTGCTCAGCGGCTGTGTGGCCGATCAAATGATCAAACGCAACTGCATGAGCACCACAAACACGCG
CAAAATAATGACAGGAGTGGCCGCCTTTGGACCGGCTGTCTTCATGGTAGCTGCATCCTATGCTGGATGCAATCGAGGCA
TGGTCGTTGCTCTATTCACAATTACCATGGGTCTGATGGGCACCTACTATGCTGGCATGAAGCTCACGCCATTGGACATG
AGTCCGAATTATGCTGGAACTCTGATGGCCATTACCAATGGCATTGGTGCGATTACGGGCGTGGTATCACCATACTTAGT
TGGTGTAATGACACCGAATGCCACCCTCTTGGAGTGGAGATTAGTCTTCTGGGTCGCATTTGGCGTTCTTGTCGTCACGG
CGATTGTGTATTGTATTTGGGCGTCCGGCGATGTGCAACCCTTCAATGATGGCACCAATTCAAACAAGAAGAAGGATGCC
GCCTGA
ORF - retro_dmel_46 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.31 % |
| Parental protein coverage: | 93.75 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QQPQWGISLSRYFVIPQRVILAIMGFLAILNAYTMRVCLSQAITVLVVKKNSTDDDSEAICEPDDIDEGT |
| .QP.WGI.LS..FV.PQR.ILAIMGF.AI.NAYTMR.CLSQAITVLVVK.N.T....EAICEPDD..... | |
| Retrocopy | EQPEWGIKLSKFFVLPQRWILAIMGFFAIFNAYTMRICLSQAITVLVVKRNYTIFHTEAICEPDDQSDPS |
| Parental | SV--GGDFEWSEELQGLILSSFYIGYIVTHIPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLAINKGDSD |
| S...GGD..WS.E.QGLIL.SFYIGYIVTH.PGG.LA.KFGGKWTL.LGI..TA.FT.LTP..I..G..D | |
| Retrocopy | STFEGGDYDWSQEKQGLILASFYIGYIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYGGAD |
| Parental | WLIVTRVLMGLGEGTTFPALSVLLAAWVPANERGKLGALVLGGGQVGTIMGNLLSGVFIDAYGWEFVFYF |
| .LIV.RVLMGLGEGTTFPALSVLLA.WVPANERG.LGALVLGGGQ.G.I.GN..SG.......W..VFY. | |
| Retrocopy | ALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGYVLSSMDWPWVFYV |
| Parental | FGGLGVVWFAIFMFLCYSDPTSHPFIKPSEREYLVKEIGTISRNEDLPPTPWKAILTNLPMFALVAAQIG |
| F.....VWF..F...C.S.P..HP.IKP.ER..L..E......N...P.TP..AILT..PM.AL..AQIG | |
| Retrocopy | FAIIALVWFVVFTLVCFSSPFTHPYIKPEERAFLAQEVPPPDKNK--PKTPFFAILTSIPMWALISAQIG |
| Parental | HDWGFYIMVTDLPKYMADVLQFSIKANGLYSSLPYVMMWIVSVGSGFVADWMIRRGVLSTTNTRKVMTGL |
| HDWGFYIMV..LPKYM.DVL.FSIK.NGLYSSLPYV.MWI.S..SG.VAD.MI.R...STTNTRK.MTG. | |
| Retrocopy | HDWGFYIMVSYLPKYMSDVLRFSIKSNGLYSSLPYVTMWIMSLLSGCVADQMIKRNCMSTTNTRKIMTGV |
| Parental | AAFGPAIFMVGASYAGCDRVLVVVLFTICMGLMGAYYAGMKLSPLDMSPNYAGTLMAITNGIGAITGVIT |
| AAFGPA.FMV.ASYAGC.R..VV.LFTI.MGLMG.YYAGMKL.PLDMSPNYAGTLMAITNGIGAITGV.. | |
| Retrocopy | AAFGPAVFMVAASYAGCNRGMVVALFTITMGLMGTYYAGMKLTPLDMSPNYAGTLMAITNGIGAITGVVS |
| Parental | PYLVGVMTPNASLLEWRLVFWVAFGVLCFTAVIYCIWASGEVQPFNN |
| PYLVGVMTPNA.LLEWRLVFWVAFGVL..TA..YCIWASG.VQPFN. | |
| Retrocopy | PYLVGVMTPNATLLEWRLVFWVAFGVLVVTAIVYCIWASGDVQPFND |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_46 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_46 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Drosophila melanogaster | FBgn0010497 | 1 retrocopy |
retro_dmel_46 ,
|
| Drosophila melanogaster | FBgn0024315 | 1 retrocopy |