RetrogeneDB ID: retro_dmel_46

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2L:13595551..13596997(-)
• Located in intron of: FBgn0259984

Retrocopy information

• Ensembl ID: FBgn0028513
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: dmGlut
• Ensembl ID: FBgn0010497
• Aliases: None
• Description: Dietary and metabolic glutamate transporter [Source:FlyBase gene name;Acc:FBgn0010497]

Sequence

>retro_dmel_46
ATGGCGGATGCAAAAGAGCAACCAGAATGGGGCATAAAGCTCTCAAAATTCTTTGTATTACCCCAACGCTGGATTCTGGC
CATCATGGGATTCTTTGCCATCTTTAATGCATACACCATGCGGATATGTCTATCCCAGGCCATCACAGTGCTGGTGGTGA
AGAGGAATTATACTATTTTCCACACCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTCGAGGGA
GGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGCCTCTTTCTACATTGGCTATATTGTAACTCATTTGCC
TGGTGGAATTCTGGCTGACAAATTTGGCGGAAAGTGGACACTGAGTCTTGGAATCTTTTTTACGGCTATTTTTACATTGC
TGACACCCGTCTGCATTGTTTATGGCGGTGCCGATGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACC
ACTTTCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGAGGAATGCTGGGAGCCCTTGTACTCGG
CGGTGGTCAGATGGGTAGTATTGCTGGTAACATTATTTCTGGCTATGTACTCAGCTCCATGGACTGGCCATGGGTATTCT
ATGTTTTTGCGATCATCGCCCTTGTCTGGTTTGTCGTTTTCACGCTAGTGTGCTTTAGCAGTCCATTCACTCATCCATAT
ATCAAGCCAGAGGAACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAGCCGAAGACACCATTTTTTGC
CATATTAACAAGCATACCCATGTGGGCATTGATCAGTGCTCAAATCGGACACGATTGGGGTTTCTATATTATGGTCTCCT
ACCTGCCAAAGTATATGTCGGATGTGCTGCGGTTTTCGATTAAGTCGAATGGTCTCTACTCCTCACTGCCCTACGTTACC
ATGTGGATCATGTCGCTGCTCAGCGGCTGTGTGGCCGATCAAATGATCAAACGCAACTGCATGAGCACCACAAACACGCG
CAAAATAATGACAGGAGTGGCCGCCTTTGGACCGGCTGTCTTCATGGTAGCTGCATCCTATGCTGGATGCAATCGAGGCA
TGGTCGTTGCTCTATTCACAATTACCATGGGTCTGATGGGCACCTACTATGCTGGCATGAAGCTCACGCCATTGGACATG
AGTCCGAATTATGCTGGAACTCTGATGGCCATTACCAATGGCATTGGTGCGATTACGGGCGTGGTATCACCATACTTAGT
TGGTGTAATGACACCGAATGCCACCCTCTTGGAGTGGAGATTAGTCTTCTGGGTCGCATTTGGCGTTCTTGTCGTCACGG
CGATTGTGTATTGTATTTGGGCGTCCGGCGATGTGCAACCCTTCAATGATGGCACCAATTCAAACAAGAAGAAGGATGCC
GCCTGA

Alignment

ORF - retro_dmel_46 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.31 %
• Parental protein coverage: 93.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QQPQWGISLSRYFVIPQRVILAIMGFLAILNAYTMRVCLSQAITVLVVKKNSTDDDSEAICEPDDIDEGT
          .QP.WGI.LS..FV.PQR.ILAIMGF.AI.NAYTMR.CLSQAITVLVVK.N.T....EAICEPDD.....
Retrocopy EQPEWGIKLSKFFVLPQRWILAIMGFFAIFNAYTMRICLSQAITVLVVKRNYTIFHTEAICEPDDQSDPS

Parental  SV--GGDFEWSEELQGLILSSFYIGYIVTHIPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLAINKGDSD
          S...GGD..WS.E.QGLIL.SFYIGYIVTH.PGG.LA.KFGGKWTL.LGI..TA.FT.LTP..I..G..D
Retrocopy STFEGGDYDWSQEKQGLILASFYIGYIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYGGAD

Parental  WLIVTRVLMGLGEGTTFPALSVLLAAWVPANERGKLGALVLGGGQVGTIMGNLLSGVFIDAYGWEFVFYF
          .LIV.RVLMGLGEGTTFPALSVLLA.WVPANERG.LGALVLGGGQ.G.I.GN..SG.......W..VFY.
Retrocopy ALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGYVLSSMDWPWVFYV

Parental  FGGLGVVWFAIFMFLCYSDPTSHPFIKPSEREYLVKEIGTISRNEDLPPTPWKAILTNLPMFALVAAQIG
          F.....VWF..F...C.S.P..HP.IKP.ER..L..E......N...P.TP..AILT..PM.AL..AQIG
Retrocopy FAIIALVWFVVFTLVCFSSPFTHPYIKPEERAFLAQEVPPPDKNK--PKTPFFAILTSIPMWALISAQIG

Parental  HDWGFYIMVTDLPKYMADVLQFSIKANGLYSSLPYVMMWIVSVGSGFVADWMIRRGVLSTTNTRKVMTGL
          HDWGFYIMV..LPKYM.DVL.FSIK.NGLYSSLPYV.MWI.S..SG.VAD.MI.R...STTNTRK.MTG.
Retrocopy HDWGFYIMVSYLPKYMSDVLRFSIKSNGLYSSLPYVTMWIMSLLSGCVADQMIKRNCMSTTNTRKIMTGV

Parental  AAFGPAIFMVGASYAGCDRVLVVVLFTICMGLMGAYYAGMKLSPLDMSPNYAGTLMAITNGIGAITGVIT
          AAFGPA.FMV.ASYAGC.R..VV.LFTI.MGLMG.YYAGMKL.PLDMSPNYAGTLMAITNGIGAITGV..
Retrocopy AAFGPAVFMVAASYAGCNRGMVVALFTITMGLMGTYYAGMKLTPLDMSPNYAGTLMAITNGIGAITGVVS

Parental  PYLVGVMTPNASLLEWRLVFWVAFGVLCFTAVIYCIWASGEVQPFNN
          PYLVGVMTPNA.LLEWRLVFWVAFGVL..TA..YCIWASG.VQPFN.
Retrocopy PYLVGVMTPNATLLEWRLVFWVAFGVLVVTAIVYCIWASGDVQPFND

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_46 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_46 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0010497	1 retrocopy	retro_dmel_46 ,
Drosophila melanogaster	FBgn0024315	1 retrocopy	retro_dmel_29,