RetrogeneDB ID: | retro_dmel_75 | ||
Retrocopy location | Organism: | Fruit fly (Drosophila melanogaster) | |
| Coordinates: | 2L:9013049..9013922(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | FBgn0032089 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Rcd-1 | ||
| Ensembl ID: | FBgn0031047 | ||
| Aliases: | None | ||
| Description: | Required for cell differentiation 1 ortholog [Source:FlyBase gene name;Acc:FBgn0031047] |
Retrocopy-Parental alignment summary:
>retro_dmel_75
ATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCCAGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCT
GGCCTATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTATGCGGACCTGGCCCCCATGCTGTGGA
AAAGCGTCGGTACCACCTGCACCCTGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTGAAGGCC
AACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCT
GCGGGACCAGATACCGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTCGAGCAGCTGCGCCTGA
CCACGCTGGGCGTGATTAATGCTCTGGCCGAGACCGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTG
CCTCACTGTCTGACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCAATCCTTGAGAAGATACTGCT
CGATGAGATGGGTCTGACGTACATTTGCGAGAACCACGATCGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAATGGTCA
TCCATATGTTGAAGTTTCCATGCCTCCGGGTGCTGAAGCATGTGGTGCGCTGCTATCTACTACTTACGGAAAATGCGCGC
GCTCGCAGTGCACTTAGAGTGTGTCTGCCGGATCTGCTGCGTGACGGCACCTTCACGTCGCTCGTGCAACATGACACGTG
CACCAAGCAGTGGCTGCAGATGCTGCTCAAGAACCTGCAGACAAACGCCGTCAACCCAATGGGCTCCTCCTAG
ORF - retro_dmel_75 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.12 % |
| Parental protein coverage: | 89.47 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QQQTEQEKVYQWINELAHPDTRETALLELSKKRETDLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAH |
| QQQ.E.EKVYQ.I.ELA.P.TRETALLELSK....DLAPMLW.S.GT.C.LLQEIVNIYP.IT.P.L.A. | |
| Retrocopy | QQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAPMLWKSVGTTCTLLQEIVNIYPIITTPVLKAN |
| Parental | QSNRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGALVKTDEQEVI |
| QSNRVC.AL.LLQCVASHPETR.AFL..QIP.YLYPFLSTT.K.RPFE.LRLT.LGVI.AL..T...EV. | |
| Retrocopy | QSNRVCYALTLLQCVASHPETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEVL |
| Parental | TFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERFSHVAITLGKMVIQLAKDPC |
| .FL...E.VP.CL..M..GS.L.K..AT.I..KILLDE.GL.YIC....RFS.VAITLGKMVI...K.PC | |
| Retrocopy | IFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHDRFSQVAITLGKMVIHMLKFPC |
| Parental | ARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTFALCLQEDKSTKQWLQMLLKNLELGA |
| .R.LKHVVRCYL.L..N.RAR.AL..CLPD.LRDGTF....Q.D..TKQWLQMLLKNL...A | |
| Retrocopy | LRVLKHVVRCYLLLTENARARSALRVCLPDLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_75 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_75 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000011079 | 1 retrocopy | |
| Drosophila melanogaster | FBgn0031047 | 1 retrocopy |
retro_dmel_75 ,
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