RetrogeneDB ID: | retro_dnov_2374 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6869:41736..42251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | THOC7 | ||
Ensembl ID: | ENSDNOG00000005917 | ||
Aliases: | None | ||
Description: | THO complex 7 homolog (Drosophila) [Source:HGNC Symbol;Acc:29874] |
Percent Identity: | 65.9 % |
Parental protein coverage: | 84.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHE-KIAE |
SF..WC.SGSQEEGYSQ.Q.MLSTL...EFSM..TLLV...NLRE..NY.K...EIE.SIAGA....IAE | |
Retrocopy | SFTQWCHSGSQEEGYSQHQGMLSTLA*FEFSMCNTLLVHKRNLRERKNYVKMSEEIERSIAGASK<RIAE |
Parental | CKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLL |
C.KQ.L.AKR.R.NRQEYDA.AKVIQH.P...E.LKELE.LGK.LEHLS.IKES.E.K.ELRRK.FH.LL | |
Retrocopy | CRKQLLHAKRLRNNRQEYDAWAKVIQHYPGQPEALKELEPLGKGLEHLSQIKESLEAKTELRRKHFHGLL |
Parental | STIHELQQTLENDEKLSEVEEAQETSMETNPKP |
ST.H.LQ..L...EKLSE.EEA...S.E....P | |
Retrocopy | STLHQLQLPLREEEKLSELEEAEDNSIESDAAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 40 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 39 .32 RPM |
SRP012922_heart | 0 .00 RPM | 16 .47 RPM |
SRP012922_kidney | 0 .00 RPM | 29 .30 RPM |
SRP012922_liver | 0 .00 RPM | 16 .72 RPM |
SRP012922_lung | 0 .31 RPM | 49 .02 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 21 .46 RPM |
SRP012922_spleen | 0 .11 RPM | 32 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012170 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000034899 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007930 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005917 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000001987 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012060 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000021860 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024865 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013894 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011491 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007069 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013618 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010083 | 1 retrocopy |