RetrogeneDB ID: | retro_dnov_2608 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_89775:5885..6292(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSDNOG00000024791 | ||
Aliases: | None | ||
Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Percent Identity: | 75.91 % |
Parental protein coverage: | 53.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LGCSSLGPKTPAISPSKRARSA-EEGGVRIRFVRLSEHATAPTKGSARAAGFDLYSAYDYTIPPMEKALV |
.......P.TPAISPSKRAR...EEGG.RIRF.RLSEHATAPTKGSARAAG.DLYSAYDYTIPP.EKALV | |
Retrocopy | MAAGGTAPETPAISPSKRARPG<EEGGERIRFARLSEHATAPTKGSARAAGSDLYSAYDYTIPPTEKALV |
Parental | KTDIQIALPSGCYGRVXXXXXXXXXXXXXXXXGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLI |
K.DIQ.ALPSGCYGRV................GVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLI | |
Retrocopy | KADIQRALPSGCYGRVAPRSGLAAKHSTDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .58 RPM | 32 .87 RPM |
SRP012922_cerebellum | 0 .82 RPM | 13 .06 RPM |
SRP012922_heart | 0 .93 RPM | 10 .44 RPM |
SRP012922_kidney | 0 .55 RPM | 23 .27 RPM |
SRP012922_liver | 0 .31 RPM | 3 .41 RPM |
SRP012922_lung | 0 .61 RPM | 14 .36 RPM |
SRP012922_quadricep_muscle | 0 .35 RPM | 7 .44 RPM |
SRP012922_spleen | 0 .80 RPM | 73 .37 RPM |