>retro_dnov_280
AAAATTCAAGAATCTGTGAGGGGAAAAACATTTTCATTAACCAAACTGCTTCAAAGGATGTGAAGACCACCATCACGGGG
CTCCTGATCATGGTGTATGTCCCTAAAACCTCTTGTGCCAAGACCATTGTCAGCATGATTCCCTACTTTCCTTACAATAA
ATAGTACAAGATGAGGAAAAGACACTCCATTGTCTCTAAATTGATGGCTTCAATGATATGCAAAGCTGGTCTAACTCATC
TTATTATTATGGATTTACACAAGAAAGAAATTCAGGGCTTCATAAATATTCCTGTTATCTTTTAAGAGCATCACCCTTCC
TATTACAGAATATTCAAGAAGAGATCCTGGATTACAGGAATGAGTGATCATGGCCAAATCTCCAGCTTCTACCAAGAGGG
CACAGTCTTTCACTAAGCAACTTTGACTGGGCATTGCAGTGATTCACTGTGAAGTGCAGGACGCCAAGTCCAACTTGGTG
GACAGAAGTCATTCCCCACCTGGTCAGAAATGTGGCTGCCATCCACTCCAGCCTGGAGATC
ORF - retro_dnov_280 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.92 % |
Parental protein coverage: |
50.84 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | EIKESVRGQ-DIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLL |
| .I.ESVRG...IFI.QT...DV.T....LLIM.Y..KT.CA..I...IPYFPY.K..KMRKR.SIV.KL. |
Retrocopy | KIQESVRGK<NIFINQTASKDVKTTITGLLIMVYVPKTSCAKTIVSMIPYFPYNK*YKMRKRHSIVSKLM |
|
Parental | ASMLAKAGLTHIITMDLHQKEIQGFFS-FPVDNLRASPFLLQYIQEEIPNYRNA-VIVAKSPDAAKRAQS |
| ASM..KAGLTH.I.MDLH.KEIQGF........LRASPFLLQ.IQEEI..YRN..VI.AKSP...KRAQS |
Retrocopy | ASMICKAGLTHLIIMDLHKKEIQGFIN<YSCYLLRASPFLLQNIQEEILDYRNE<VIMAKSPASTKRAQS |
|
Parental | YAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVK-NATVHPGLEL |
| ....L.LG.AVIH.E.Q.A.....D..HSPP..K..A..H..LE. |
Retrocopy | FTKQL*LGIAVIHCEVQDAKSNLVDRSHSPPGQK>VAAIHSSLEI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
75 .84 RPM |
SRP012922_cerebellum |
0 .00 RPM |
23 .09 RPM |
SRP012922_heart |
0 .00 RPM |
7 .19 RPM |
SRP012922_kidney |
0 .00 RPM |
35 .59 RPM |
SRP012922_liver |
0 .00 RPM |
33 .44 RPM |
SRP012922_lung |
0 .00 RPM |
78 .96 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
5 .54 RPM |
SRP012922_spleen |
0 .00 RPM |
30 .79 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_280 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.