>retro_mdom_1440
CTCCCATCACTGTCATAGAACAAACAAAGCAAAATGAGAAAGAGGGTTTTTATTGTGTGCAATATCCTAGCTTCTATGTT
AGCCAAAGCAGGTTTAACACACATTATAACTATGGATCTTCATCAAATGGAAATATAAGGCTTTTTCAGCTTCCCTGTGG
ACAGCCTCAGAACATCACTTTTCCTACTATGATATATCCAAGAATAAATTTCAAATTACAGAAGTGTAGGCATTGTAGCC
AAGTCTCCTGATGCTGGAAAGAAGGTCCAATCATATCCTGAGAGACTTCACTTGGGTTCAGCTTAGTATATGGAGAGACT
TAATATACAGCGTTCAACATGAATGATGGACATCATTCTCCTCCAAAGGTCAAAAAGGCTACCATCCACCCTAGTGTTGA
GTTGCCTTTGATTATGGCCAAAGAAAACCACCAATTACTGTAGTTGGAGATGTTGGAGGGTCAATTACCATCATAATGGA
CAACATCATTGATGATGTGGAAAGATTTATGGATGCTGCCAACATACTCAAATAGTGAGGTGCCTACAGGATTTATGTCA
TGGCCACTCATGGCATCTTGTCTACAGATGCTCCCCACCTCAGGAAGGAATCTTCCATTGTTGAGCTGACCAACACAGTT
CTTTAAGAGTTACAGAAAATGAAGTGTCCCATAATAAAGGCTGTTAACATTAGTTTGATTTTTTCAGAAGCCATACAAAG
ATTCCATAATGGGGAGTCCATGACCTACTTGTTTAGAGACATTACTGTAGATGAC
ORF - retro_mdom_1440 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.34 % |
Parental protein coverage: |
67.79 % |
Number of stop codons detected: |
8 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | IPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEI |
| .P.....KQSKMRKR..IVC..LASMLAKAGLTHIITMDLHQ.EI.GFFSFPVD.LR.S.FLL.YIQE.I |
Retrocopy | LPSLS*NKQSKMRKRVFIVCNILASMLAKAGLTHIITMDLHQMEI*GFFSFPVDSLRTSLFLL*YIQE*I |
|
Parental | PNYRNAVIVAKSPDAAKRAQSYAERLRLGLA-VIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMM |
| .NYR...IVAKSPDA.K..QSY.ERL.LG.A....GE...T...M.DG.HSPP.VK.AT.HP..ELPL.M |
Retrocopy | SNYRSVGIVAKSPDAGKKVQSYPERLHLGSA<LVYGET*YTAFNMNDGHHSPPKVKKATIHPSVELPLIM |
|
Parental | AKE-KPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSADAPRLIEESSID |
| AKE.KPPITVVGDVGG.I.II.D.IIDDVE.F..AA.ILK..GAY.IYVMATHGILS.DAP.L..ESSI. |
Retrocopy | AKE<KPPITVVGDVGGSITIIMDNIIDDVERFMDAANILK**GAYRIYVMATHGILSTDAPHLRKESSI- |
|
Parental | EVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD |
| .V..TNTV..E.QK..CP.IK.V.ISLI.SEAI.R.HNGESM.YLFR.ITVDD |
Retrocopy | -VELTNTVL*ELQKMKCPIIKAVNISLIFSEAIQRFHNGESMTYLFRDITVDD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .00 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1440 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1440 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.