RetrogeneDB ID: retro_dnov_780

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_10675:39188..39494(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDNOG00000025212
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MRPS26
• Ensembl ID: ENSDNOG00000024910
• Aliases: None
• Description: mitochondrial ribosomal protein S26 [Source:HGNC Symbol;Acc:14045]

Sequence

>retro_dnov_780
GAGAACGCCGCTGAGCATCAGGAGCTGCTGACCTGAGCCAGGCGGAAACCAGTGGCTGCAGGAGCTCTGGCTGGCGAGGC
TGCGGCAGGAGGCGCGGGAGCAGGAGCAGCAGCAGGCAGAGGAGAAAACCTGCCAGGCCCGGAAGGTACAGGCTTGGGTA
CAGCTCAAGGAGCAGGAAGTGCTGCCGCTGCAGAGACGGCGAGAAACTTCATCACCCAAGAGAACCTGGAAGCCCCGGGG
GAGGAAGCACTGGACTCATCAAAGAGGTACACCTGGGTGCTCAGGAGAGCAGGGCCGCGGGTCAAG

Alignment

ORF - retro_dnov_780 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.98 %
• Parental protein coverage: 50.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ENAAEHRELMS-WNQAE-NQRLHELRLARLLQEAREQEQRQAEKKACQAREAQAWAQLKEREVLQLQ-EE
          ENAAEH.EL.....QAE.NQ.L.EL.LARL.QEAREQEQ.QAE.K.CQAR..QAW.QLKE.EVL.LQ.E.
Retrocopy ENAAEHQELLT<LSQAE<NQWLQELWLARLRQEAREQEQQQAEEKTCQARKVQAWVQLKEQEVLPLQ<ET

Parental  AKNFITRENLDARVEEALDSPKSYNWALTREGLPVR
          A.NFIT.ENL.A..EEALDS.K.Y.W.L.R.G..V.
Retrocopy ARNFITQENLEAPGEEALDSSKRYTWVLRRAGPRVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	22.75 RPM
SRP012922_cerebellum	0.14 RPM	25.98 RPM
SRP012922_heart	0.00 RPM	30.40 RPM
SRP012922_kidney	0.00 RPM	35.87 RPM
SRP012922_liver	0.00 RPM	21.05 RPM
SRP012922_lung	0.00 RPM	21.38 RPM
SRP012922_quadricep_muscle	0.00 RPM	26.65 RPM
SRP012922_spleen	0.00 RPM	29.19 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_780 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000024910	2 retrocopies	retro_dnov_2149, retro_dnov_780 ,
Felis catus	ENSFCAG00000028185	1 retrocopy	retro_fcat_843,
Loxodonta africana	ENSLAFG00000007936	1 retrocopy	retro_lafr_268,
Mus musculus	ENSMUSG00000037740	1 retrocopy	retro_mmus_978,
Nomascus leucogenys	ENSNLEG00000027041	1 retrocopy	retro_nleu_2813,