RetrogeneDB ID: retro_nleu_2813

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397437.1:1803631..1804084(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000015704
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MRPS26
• Ensembl ID: ENSNLEG00000027041
• Aliases: None
• Description: mitochondrial ribosomal protein S26 [Source:HGNC Symbol;Acc:14045]

Sequence

>retro_nleu_2813
GTGCTGATGGAGCGTTACCAGCACTACCGCCAGACCGTGCGCGCCCTCAGGATGGAGTTTGTGTCCGAGGTGCGGAGGAA
GGTGCACGAGGCCCGAGCCGGGGTTCTGGCGGAGCGGAAGGCCCTGAAGGACGCCGCCGAGCACCGCGAGCTGATAGCCT
GGAACCAGGCGGAGAACCGGCGGCTGCACGAGCTGCGGATAGCGAGGTTGCGGCAGGAGGAGCAGGAGCAGGAGCAACGG
CAGGCGTTGGAGCAGGCACGCAAGGCCGAAGAGGTGCAGGCCTGCGCGCAGCGCAAGGAGCGGGAAGTGCTGCAGCTGCA
GGAAGAGGTGAAAAACTTCATCACCCGAGAGAACCTGGAGGCACGGGTGAAAGCAGCATTGGACTCCCCGAAGAACTACA
ACTGGGCCATCACCAGAGAGGGGCTGGTGGTCAGGCCACAACGCAGGGACTCC

Alignment

ORF - retro_nleu_2813 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.36 %
• Parental protein coverage: 73.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VLMERYQHYRQTVRALRMEFVSEVRKKVHEARAGVLAERKARKDAAEHRELMAWNQAENRRLHELRIARL
          VLMERYQHYRQTVRALRMEFVSEVR.KVHEARAGVLAERKA.KDAAEHREL.AWNQAENRRLHELRIARL
Retrocopy VLMERYQHYRQTVRALRMEFVSEVRRKVHEARAGVLAERKALKDAAEHRELIAWNQAENRRLHELRIARL

Parental  RQEEREQEQRQALEQARKAEEVQAWAQRKEREVLQLQEEVKNFITRENLEARVEAALDSPKNYNWAITRE
          RQEE.EQEQRQALEQARKAEEVQA.AQRKEREVLQLQEEVKNFITRENLEARV.AALDSPKNYNWAITRE
Retrocopy RQEEQEQEQRQALEQARKAEEVQACAQRKEREVLQLQEEVKNFITRENLEARVKAALDSPKNYNWAITRE

Parental  GLVVRSQRRDS
          GLVVR.QRRDS
Retrocopy GLVVRPQRRDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2813 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000024910	2 retrocopies	retro_dnov_2149, retro_dnov_780,
Felis catus	ENSFCAG00000028185	1 retrocopy	retro_fcat_843,
Loxodonta africana	ENSLAFG00000007936	1 retrocopy	retro_lafr_268,
Mus musculus	ENSMUSG00000037740	1 retrocopy	retro_mmus_978,
Nomascus leucogenys	ENSNLEG00000027041	1 retrocopy	retro_nleu_2813 ,