RetrogeneDB ID: | retro_dord_520 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_25943:1873..2353(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Kras | ||
Ensembl ID: | ENSDORG00000011469 | ||
Aliases: | None | ||
Description: | v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog [Source:MGI Symbol;Acc:MGI:96680] |
Percent Identity: | 82.5 % |
Parental protein coverage: | 84.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTEYKLVVVGAGGV-KSALTIQLIQNHFVD-YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ |
M.EYKLVVVGAG.V.KSAL.I.LIQNHFVD.YDP.IEDSYR.QV.IDGETCLLDILDTA.QEE.S.M.DQ | |
Retrocopy | MIEYKLVVVGAGDVGKSALKIELIQNHFVDEYDPPIEDSYRQQVIIDGETCLLDILDTASQEECSTMKDQ |
Parental | YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP |
YM..GEGFL.VFAI.NTKSFEDI.HYREQIKRVKDSEDVPMVL.GNKC.LP.RTVD.KQAQDLARSYGIP | |
Retrocopy | YMKPGEGFLYVFAISNTKSFEDIYHYREQIKRVKDSEDVPMVLIGNKCNLPLRTVDKKQAQDLARSYGIP |
Parental | FIETSAKTRQRVEDAFYTLV |
FI.TSAKTRQ.V...FYT.V | |
Retrocopy | FIKTSAKTRQGVDNVFYTSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000001086 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011469 | 1 retrocopy |
retro_dord_520 ,
|
Erinaceus europaeus | ENSEEUG00000003058 | 1 retrocopy | |
Homo sapiens | ENSG00000133703 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015381 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017458 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005266 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003830 | 2 retrocopies |