RetrogeneDB ID: | retro_hsap_3474 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:54635380..54635824(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000220635 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRAS | ||
Ensembl ID: | ENSG00000133703 | ||
Aliases: | KRAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A, K-RAS4B, KI-RAS, KRAS1, KRAS2, NS, NS3, RASK2 | ||
Description: | Kirsten rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:6407] |
Percent Identity: | 78.81 % |
Parental protein coverage: | 77.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR-D |
MTEYKL.VVGAGGV.KS.LTIQLIQNHFVD.YDPTIE.SYRKQVVIDGETCLLDILDT.GQEEY.AMR.D | |
Retrocopy | MTEYKLAVVGAGGVSKSVLTIQLIQNHFVDQYDPTIENSYRKQVVIDGETCLLDILDTTGQEEYNAMR<D |
Parental | QYMRTGEGFLCVF----AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR |
QYMRTG......F....AINN.KSFED.H.YR.QIKR.KDSEDVPMVLVGNKCDLPSRTVDTK....L.. | |
Retrocopy | QYMRTGXXXXXXFLCVFAINNIKSFEDMHNYRKQIKRFKDSEDVPMVLVGNKCDLPSRTVDTK-GSGLSK |
Parental | SYG-IPFIETS |
..G.IPFIETS | |
Retrocopy | ELG>IPFIETS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 62 .85 RPM |
bodymap2_adrenal | 0 .00 RPM | 75 .12 RPM |
bodymap2_brain | 0 .00 RPM | 99 .74 RPM |
bodymap2_breast | 0 .00 RPM | 50 .10 RPM |
bodymap2_colon | 0 .00 RPM | 68 .68 RPM |
bodymap2_heart | 0 .00 RPM | 28 .60 RPM |
bodymap2_kidney | 0 .00 RPM | 66 .90 RPM |
bodymap2_liver | 0 .00 RPM | 30 .10 RPM |
bodymap2_lung | 0 .00 RPM | 56 .15 RPM |
bodymap2_lymph_node | 0 .00 RPM | 63 .87 RPM |
bodymap2_ovary | 0 .00 RPM | 88 .90 RPM |
bodymap2_prostate | 0 .00 RPM | 68 .29 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 41 .40 RPM |
bodymap2_testis | 0 .00 RPM | 52 .54 RPM |
bodymap2_thyroid | 0 .00 RPM | 43 .56 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 126 .49 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_166851 | 1570 libraries | 151 libraries | 108 libraries | 0 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2870 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000011469 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003058 | 1 retrocopy | |
Homo sapiens | ENSG00000006451 | 2 retrocopies | |
Homo sapiens | ENSG00000116473 | 1 retrocopy | |
Homo sapiens | ENSG00000127314 | 2 retrocopies | |
Homo sapiens | ENSG00000133703 | 1 retrocopy |
retro_hsap_3474 ,
|
Macaca mulatta | ENSMMUG00000015381 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017458 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005266 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003830 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |