RetrogeneDB ID: | retro_dord_627 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_42275:1544..1889(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uxt | ||
Ensembl ID: | ENSDORG00000001025 | ||
Aliases: | None | ||
Description: | ubiquitously expressed transcript [Source:MGI Symbol;Acc:MGI:1277988] |
Percent Identity: | 87.83 % |
Parental protein coverage: | 92.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KVLDHRDKVYEQLATYLQLKNVIERL-EANHSELYMQVDLGCNFFVDTVVSDTSRIYVALGYGFFLELTL |
KVLDH.DK.YEQLATYLQLKNVIE.L.EANHSELYM.VDLGCNFF.DTVVSDTSRIYVALGY.FFLELTL | |
Retrocopy | KVLDHQDKIYEQLATYLQLKNVIE*LQEANHSELYMEVDLGCNFFIDTVVSDTSRIYVALGYRFFLELTL |
Parental | AEALKFIDRKSSLLTELSNSLTKDSMNIKAHIHMLLEGLRELQGL |
AEAL.FID.KSSLLT.LSNSLTKDSMN.KAH.HMLLEGL.ELQG. | |
Retrocopy | AEALNFIDLKSSLLTKLSNSLTKDSMNSKAHVHMLLEGLKELQGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000009154 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001025 | 1 retrocopy |
retro_dord_627 ,
|
Erinaceus europaeus | ENSEEUG00000006151 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003352 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016263 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013405 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001134 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000009893 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000012719 | 2 retrocopies |