RetrogeneDB ID: | retro_rnor_683 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:40728102..40728568(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Uxt | ||
Ensembl ID: | ENSRNOG00000009893 | ||
Aliases: | None | ||
Description: | Protein UXT [Source:UniProtKB/Swiss-Prot;Acc:Q63ZY7] |
Percent Identity: | 67.72 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MATPPKRRALDTVGEKVLR-YEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYM |
M...PK..AL.T.GEKVL...EAFISDVLQ.DLQK.LDH.D....QL..YLQLRNVIE..QE...SELY. | |
Retrocopy | MVMTPKQWALGTTGEKVLW<VEAFISDVLQ*DLQKALDHWDLGI*QLFLYLQLRNVIESFQEPIYSELYV |
Parental | QVDLGCNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNI-KANIHMM |
.VDLGCNFF..T.VPD.S.I.V.LGYGFFLEL.LAE.LKFID.KSSLLTEL...L.KDSMNI.KA.I... | |
Retrocopy | RVDLGCNFFIVTAVPDLSHICVSLGYGFFLELILAEVLKFID*KSSLLTELRIFLIKDSMNI<KAQILTV |
Parental | LEGLRELQGLQNFPEPSP |
..G.RE..GLQNFPEP.P | |
Retrocopy | VGGHREVRGLQNFPEPCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .96 RPM |
SRP017611_liver | 0 .00 RPM | 10 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_715 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000009154 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001025 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006151 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003352 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016263 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013405 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001134 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000009893 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000012719 | 2 retrocopies |