RetrogeneDB ID: | retro_drer_11 | ||
Retrocopy location | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 10:45675901..45676888(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSDARG00000086066 | |
| Aliases: | hcar1-1, gpr81-1 | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | hcar1-2 | ||
| Ensembl ID: | ENSDARG00000079958 | ||
| Aliases: | None | ||
| Description: | hydroxycarboxylic acid receptor 1-2 [Source:ZFIN;Acc:ZDB-GENE-111111-6] |
Retrocopy-Parental alignment summary:
>retro_drer_11
ATGAACAACTCCTCCTCGGTGTGCTGCGCTTTCGACGCTCCCATTCTGGATGAGGTGTTACCCCCTGTTCTGTTCAGCGA
GTTCGTCCTGGGCCTGATGGGGAACGGTCTGGCCCTCTGCATGTTCTTCTTCCACAGGGACTCCTGGAAGCCCAACTCCA
TCTATCTGGCTCATCTGGCTCTGGCCGACTCGCTGGTGCTGTTCTGCCTTCCGTTCCGGGCTGACTACTACCGGCGGGGC
AAGCACTGGGTCTACGGGGACGCTTTCTGCCGTGTGCTGCTGTTTCTGCTGGCTGCAAATCGAGCCGCCGGTATCTTCTT
CCTGACGGCGGTGGCTGTGGACCGATACCTGAAGATCGTGCACCCGCTGAACCCCATCAACCAAATGGGTCTGCGCTACG
CCCTGTGGGTGTCTGTGGGCCTGTGGGCGCTCATCATAGCCATGACCGTATATCTGCTCGCCGATAAACACTTCTACTAT
CGAAATAACCGAACGCAGTGCGAAAGCTTCAATATCTGTTTAGGACACAACGCTCTGTCTGATTGGCACAATTCGTTTTA
CGTTATTCAATTCTTCGTGCCGACGTTCATCGTCATCTACTGCTCCACATGTATAACCTGGCAGCTGAAGGGTAAAACAA
TTGACAAGCACGGTAAAATAAGAAGAGCTGTGCGGTTTGTGTTAGCAGTGGCTTTGGTTTTCATCATATGCTTCTTCCCC
AGTAATGTCTCCCGTATTGCTGTTTGGGTTCTGAAAAGCTGGCATAATGAATGTCAATATTTTCAGGATGCAAATGTGGC
GTTTTATATCACCGTCTGCTTTACGTACTTCAACAGCGTGCTCAATCCTGTGGTCTACTACTTCTCCAGCCCTGCCGTCA
GCAGATCCTTGAGGAAAATATATATGAGGATGTCAGGACAGAAGATTGAGGATGAGCATGAGAAGAATAATCACAGCTCT
GTTACAGTGTCGGCTAACGTCTCTTAA
ORF - retro_drer_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.2 % |
| Parental protein coverage: | 99.69 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | NNSSLCCTYETPLLDAYLPPVLFSEFVLGLMGNGLALCMFFFHRDSWKPNSIYLAHLALANSLVLFCLPF |
| N.SS.CC....P.LD..LPPVLFSEFVLGLMGNGLALCMFFFHRDSWKPNSIYLAHLALA.SLVLFCLPF | |
| Retrocopy | NSSSVCCAFDAPILDEVLPPVLFSEFVLGLMGNGLALCMFFFHRDSWKPNSIYLAHLALADSLVLFCLPF |
| Parental | RADYYRRGKHWVYGDAFCRVLLFLLAANRAAGIFFLTAVAVDRYLKIVHPLNRINQMGLRYALWVSVGLW |
| RADYYRRGKHWVYGDAFCRVLLFLLAANRAAGIFFLTAVAVDRYLKIVHPLN.INQMGLRYALWVSVGLW | |
| Retrocopy | RADYYRRGKHWVYGDAFCRVLLFLLAANRAAGIFFLTAVAVDRYLKIVHPLNPINQMGLRYALWVSVGLW |
| Parental | ALIIAMTVYLLADKHFYYLNNHTQCESFNICFGSNSRFTWHNVFYVIQFFVPTFIVIYCSTCITWQLKGK |
| ALIIAMTVYLLADKHFYY.NN.TQCESFNIC.G.N....WHN.FYVIQFFVPTFIVIYCSTCITWQLKGK | |
| Retrocopy | ALIIAMTVYLLADKHFYYRNNRTQCESFNICLGHNALSDWHNSFYVIQFFVPTFIVIYCSTCITWQLKGK |
| Parental | TIDKHGKIRRAVRFVLAVALVFIICFFPSNISRISMYVLKLWYNECQYFSDANDAFKTTVCFTYFNSVLN |
| TIDKHGKIRRAVRFVLAVALVFIICFFPSN.SRI...VLK.W.NECQYF.DAN.AF..TVCFTYFNSVLN | |
| Retrocopy | TIDKHGKIRRAVRFVLAVALVFIICFFPSNVSRIAVWVLKSWHNECQYFQDANVAFYITVCFTYFNSVLN |
| Parental | PVVYYFSSPAVSGSLRKIYMRILGQKIEENQEKHKTFIIHNSTNVS |
| PVVYYFSSPAVS.SLRKIYMR..GQKIE...EK........S.NVS | |
| Retrocopy | PVVYYFSSPAVSRSLRKIYMRMSGQKIEDEHEKNNHSSVTVSANVS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_11 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_11 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_11 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000079958 | 1 retrocopy |
retro_drer_11 ,
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