RetrogeneDB ID: | retro_drer_20 | ||
Retrocopy location | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 10:37052400..37052665(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | si:dkey-241l7.5 | ||
| Ensembl ID: | ENSDARG00000088989 | ||
| Aliases: | None | ||
| Description: | si:dkey-241l7.5 [Source:ZFIN;Acc:ZDB-GENE-041014-237] |
Retrocopy-Parental alignment summary:
>retro_drer_20
CATAATCAAGTGGAGAATGATTTTCTGCTGAGTCTGGTGCCGGGCTCCACACGCTGCTGGATTGGTGGAAAATGATGGTG
AAAAAAATGTACAGTGGTTGTGGTCTGATGAATCTGTGTATGGTTACACCAACTGGTGCTCAGGAGAGCCTAGTAGCGGG
TCTGAGCACTGCTTGGAGATCAACTGGACATCGAACCATTGCTGGAACAATCAGGGCTGTTCAAGTCGAATGAGCTATCT
GTGCGCTAAACCGTTTGTACCGTGT
ORF - retro_drer_20 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 87.64 % |
| Parental protein coverage: | 57.52 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | HDQVENDFLLSLVPGSTRCWIGG-HDGEQDGQWLWSDGSVYGYTNWCSGEPSSGSEHCLEINWTSNHCWN |
| H.QVENDFLLSLVPGSTRCWIGG..DGE...QWLWSD.SVYGYTNWCSGEPSSGSEHCLEINWTSNHCWN | |
| Retrocopy | HNQVENDFLLSLVPGSTRCWIGG>NDGEKNVQWLWSDESVYGYTNWCSGEPSSGSEHCLEINWTSNHCWN |
| Parental | NQGCSTRMGYLCAKRRVPC |
| NQGCS.RM.YLCAK..VPC | |
| Retrocopy | NQGCSSRMSYLCAKPFVPC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_20 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_20 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_20 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000088989 | 2 retrocopies |
retro_drer_20 , retro_drer_36,
|