RetrogeneDB ID: retro_drer_37

Retrocopy location

• Organism: Zebrafish (Danio rerio)
• Coordinates: Zv9_scaffold3515:238157..238324(-)
• Located in intron of: ENSDARG00000063035

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CABZ01062563.1
• Ensembl ID: ENSDARG00000086035
• Aliases: None
• Description: None

Sequence

>retro_drer_37
TATCCACCTATCCATCCCTCCATTCATGCATCCATCCATTCATCGATCCAATTGTCAATCAATCTGTTCATCCATCCGTC
AATTCATCCATCCATCCACCAGTCATTCATCCATTCATCAGTCATTTTATCTATTAATTTATCCATCCATTTATTTTCCA
TCCATCC

Alignment

ORF - retro_drer_37 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.0 %
• Parental protein coverage: 57.84 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  HPSIHPSIHAILLPSVCLLFHPSIHPSIHPSIH-PSIHPFIHPSIYPSIPHFVYCSIHPS
          .P.IHPSIHA....S..L.....IHPSIHPSIH.P.IHPFI...IY..I..F.....HPS
Retrocopy YPPIHPSIHASIHSSIQLSINLFIHPSIHPSIH<PVIHPFISHFIY*FIHPFIF---HPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Danio rerio was not studied using RNA-Seq expression data.

ChIP-Seq

Danio rerio was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_drer_37 retrocopy.

TSS

Danio rerio was not studied using FANTOM5 data.

Lab

retro_drer_37 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_drer_37 has 0 orthologous retrocopies within teleost group .

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000086035	3 retrocopies	retro_drer_25, retro_drer_34, retro_drer_37 ,
Danio rerio	ENSDARG00000090390	1 retrocopy	retro_drer_24,
Ficedula albicollis	ENSFALG00000013753	1 retrocopy	retro_falb_17,