RetrogeneDB ID: | retro_ecab_520 | ||
Retrocopy location | Organism: | Horse (Equus caballus) | |
| Coordinates: | 2:69721891..69722242(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSECAG00000014971 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MGST2 | ||
| Ensembl ID: | ENSECAG00000019195 | ||
| Aliases: | None | ||
| Description: | microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:7063] |
Retrocopy-Parental alignment summary:
>retro_ecab_520
ATGGCTGGGAATTCAATCTTGCTGGCTGCTGTCTCTGTCTTCCCTGTCTGTCAGCAAAGTTATTTTGCTTTGCAGGTAGG
AAAGGCAAGATTAAAATACAAAATTATGCCCTTGGCAGTCTCTGGGTCACCAGAGTTTGACAGAATATTTCATGCACAAC
AAAACTATGGGGAGTTTTACCCCACAGTCGTGATTACATTGTGGATGGCCGGATGGTATTTCAATCAAGTTTTTGCTACT
TTTCTGGGTCAGCTGTACCTCTATGCCCATCACCAGTATATCTGGGGATATTCAGAAGCTGCTAACAAAAGGGTCACTGG
TTTCGGGTTGAGTCTGGGGATTTTGGCCGTT
ORF - retro_ecab_520 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.2 % |
| Parental protein coverage: | 80.14 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAGNSILLAAVSLLSACQQSYFAFQVGRARLKYKIMPPAVSGSPEFDRIFRAQQNSVEFYPAFMITLWMA |
| MAGNSILLAAVS....CQQSYFA.QVG.ARLKYKIMP.AVSGSPEFDRIF.AQQN..EFYP...ITLWMA | |
| Retrocopy | MAGNSILLAAVSVFPVCQQSYFALQVGKARLKYKIMPLAVSGSPEFDRIFHAQQNYGEFYPTVVITLWMA |
| Parental | GWYFNQVFATCLGLLYIYARHQYFWGYSEAANKRMTGFRLGLGILAL |
| GWYFNQVFAT.LG.LY.YA.HQY.WGYSEAANKR.TGF.L.LGILA. | |
| Retrocopy | GWYFNQVFATFLGQLYLYAHHQYIWGYSEAANKRVTGFGLSLGILAV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP021940_articular_cartilage | 0 .00 RPM | 4 .25 RPM |
| SRP021940_cerebellum | 0 .00 RPM | 0 .93 RPM |
| SRP021940_embryo | 0 .00 RPM | 4 .76 RPM |
| SRP021940_placental_villous | 0 .00 RPM | 8 .18 RPM |
| SRP021940_synovial_membrane | 0 .00 RPM | 2 .86 RPM |
| SRP021940_testis | 0 .00 RPM | 2 .05 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_520 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_520 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_520 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Equus caballus | ENSECAG00000019195 | 1 retrocopy |
retro_ecab_520 ,
|
| Vicugna pacos | ENSVPAG00000005209 | 1 retrocopy |