RetrogeneDB ID: | retro_ecab_874 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:27557544..27557811(+) | ||
Located in intron of: | ENSECAG00000010335 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EFCAB2 | ||
Ensembl ID: | ENSECAG00000022403 | ||
Aliases: | None | ||
Description: | EF-hand calcium binding domain 2 [Source:HGNC Symbol;Acc:28166] |
Percent Identity: | 70.79 % |
Parental protein coverage: | 76.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VREIGTIIRSLGCCPSEGELHDLIAEVEEEEPTGYIRYEKFLPVMTQVLLERRYRPIPEDILLRAFEVLD |
...I..I..SLGC..S.GEL.DLIAE.EEEEPTGY....KFLPVMT..LLE...RPIPEDILLR.FEVL. | |
Retrocopy | MEKIRKIFSSLGCYSSQGELQDLIAEGEEEEPTGYV*FKKFLPVMTEALLENGQRPIPEDILLRFFEVLE |
Parental | PAKRGFLSKEELIKYMTEE |
PAK.G.LSKEEL.KYMTEE | |
Retrocopy | PAKCGSLSKEELSKYMTEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .18 RPM |
SRP021940_cerebellum | 0 .10 RPM | 1 .35 RPM |
SRP021940_embryo | 0 .08 RPM | 0 .74 RPM |
SRP021940_placental_villous | 0 .05 RPM | 0 .05 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .05 RPM |
SRP021940_testis | 0 .00 RPM | 1 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029154 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016907 | 1 retrocopy | |
Equus caballus | ENSECAG00000000796 | 1 retrocopy | |
Equus caballus | ENSECAG00000022403 | 1 retrocopy |
retro_ecab_874 ,
|
Oryctolagus cuniculus | ENSOCUG00000029593 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006254 | 2 retrocopies |