RetrogeneDB ID: | retro_ecab_983 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:1735450..1736113(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSECAG00000023592 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 54.62 % |
Parental protein coverage: | 86.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQ-GSKYAADRNHYRRYPRRRGPPRN |
T......P...L.S.GDGETV..D..EGE.G........PG...VQ..SK.AA.R....R....RG.P.. | |
Retrocopy | TSPQRRKPSEDLHSAGDGETVQSDAAEGE-GGRGSKHDRPGRAAVQ<DSKCAAARGQHSRCSCHRG-PHT |
Parental | YQQNYQNSESGEKNEG-SESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA |
.QQN.Q.SE.G.K..G.SESAPEGQA....P.R....P.Y..R.PY...PQ.S.PPVQ.EVMEG.D.QGA | |
Retrocopy | PQQNHQKSENG-KEQG>SESAPEGQA----PRRPQSPPCYMQR-PYR*QPQCSSPPVQREVMEGTDTQGA |
Parental | GEQGRPV-RQNMYR-GYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPEN |
GEQGRPV.RQ..Y..GYRP...R.PP.QRQPREDG...D.E.QG.ET...QPPQR..RR.FN...R..E. | |
Retrocopy | GEQGRPV<RQKLYQ<GYRP-CCRDPPHQRQPREDGH-ADQEDQGQETYCKQPPQRQHRRTFNDQHRGQEI |
Parental | PKPQDGKETKAAD-PPAENSSAPEAEQG |
P..QDG.ETKAA..PPAEN...P.AEQG | |
Retrocopy | PRLQDGQETKAAA<PPAENPH-PRAEQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 10 .92 RPM |
SRP021940_cerebellum | 0 .00 RPM | 7 .69 RPM |
SRP021940_embryo | 0 .00 RPM | 26 .72 RPM |
SRP021940_placental_villous | 0 .00 RPM | 9 .77 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 16 .99 RPM |
SRP021940_testis | 0 .00 RPM | 67 .59 RPM |