Parental gene:

YBX1, ENSOCUG00000028047

Aliases:YBX1, YB-1
Description:Y box binding protein 1 (YBX1), mRNA [Source:RefSeq mRNA;Acc:NM_001082785]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:13:124017446..124025355(-)


>ENSOCUG00000028047
AGGAATGACACCAAGGAAGATGTATTTGTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGT
AGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGTCCTGGTG
GAGTTCCAGTGCAAGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTACCCACGTCGTAGGGGTCCTCCACGC
AATTACCAGCAGAATTACCAGAATAGTGAGAGTGGGGAAAAGAATGAGGGATCGGAGAGCGCTCCCGAAGGCCAGGCCCA
ACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCA
ACCCTCCTGTGCAGGGAGAAGTGATGGAAGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGACAGAAT
ATGTATCGGGGTTATAGACCACGATTCCGCAGAGGTCCTCCTCGCCAAAGACAGCCTAGAGAGGACGGCAATGAAGAAGA
CAAGGAAAACCAAGGAGATGAGACCCAGGGTCAGCAGCCACCTCAGCGTCGGTACCGCCGCAACTTCAACTACCGACGCA
GACGCCCAGATAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCC
GAGGCTGAGCAGGGCGGGGCTGAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 22 .41 RPM
SRP017611_kidney 81 .49 RPM
SRP017611_liver 32 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000494 possible_ortholog 9 retrogenes
retro_amel_1280, retro_amel_1358, retro_amel_141, retro_amel_1486, retro_amel_215, retro_amel_418, retro_amel_625, retro_amel_837, retro_amel_909,
Canis familiaris ENSCAFG00000002541 possible_ortholog 4 retrogenes
retro_cfam_1312, retro_cfam_2118, retro_cfam_758, retro_cfam_91,
Callithrix jacchus ENSCJAG00000003155 possible_ortholog 6 retrogenes
retro_cjac_1261, retro_cjac_1701, retro_cjac_2718, retro_cjac_3156, retro_cjac_4172, retro_cjac_817,
Cavia porcellus ENSCPOG00000010888 possible_ortholog 3 retrogenes
retro_cpor_654, retro_cpor_833, retro_cpor_905,
Dipodomys ordii ENSDORG00000016627 possible_ortholog 1 retrogene
retro_dord_625,
Equus caballus ENSECAG00000023592 possible_ortholog 20 retrogenes
retro_ecab_194, retro_ecab_228, retro_ecab_324, retro_ecab_389, retro_ecab_461, retro_ecab_538, retro_ecab_539, retro_ecab_712, retro_ecab_736, retro_ecab_756, retro_ecab_950, retro_ecab_963, retro_ecab_964, retro_ecab_965, retro_ecab_966, retro_ecab_982, retro_ecab_983, retro_ecab_984, retro_ecab_985, retro_ecab_992,
Echinops telfairi ENSETEG00000004125 possible_ortholog 3 retrogenes
retro_etel_1772, retro_etel_1980, retro_etel_2134,
Felis catus ENSFCAG00000022604 possible_ortholog 6 retrogenes
retro_fcat_145, retro_fcat_1554, retro_fcat_1956, retro_fcat_241, retro_fcat_503, retro_fcat_631,
Homo sapiens ENSG00000065978 possible_ortholog 4 retrogenes
retro_hsap_1433, retro_hsap_3886, retro_hsap_4250, retro_hsap_4301,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Microcebus murinus ENSMICG00000014984 possible_ortholog 19 retrogenes
retro_mmur_1098, retro_mmur_1285, retro_mmur_1326, retro_mmur_1435, retro_mmur_1437, retro_mmur_1445, retro_mmur_1621, retro_mmur_199, retro_mmur_315, retro_mmur_413, retro_mmur_581, retro_mmur_640, retro_mmur_676, retro_mmur_679, retro_mmur_726, retro_mmur_837, retro_mmur_900, retro_mmur_919, retro_mmur_942,
Macaca mulatta ENSMMUG00000013136 possible_ortholog 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Mustela putorius furo ENSMPUG00000013922 possible_ortholog 6 retrogenes
retro_mputfur_1154, retro_mputfur_1332, retro_mputfur_1436, retro_mputfur_1627, retro_mputfur_215, retro_mputfur_293,
Nomascus leucogenys ENSNLEG00000012324 possible_ortholog 7 retrogenes
retro_nleu_1053, retro_nleu_1188, retro_nleu_1312, retro_nleu_1601, retro_nleu_1749, retro_nleu_1888, retro_nleu_270,
Oryctolagus cuniculus ENSOCUG00000015064 within_species_paralog 1 retrogene
retro_ocun_1762,
Otolemur garnettii ENSOGAG00000006784 possible_ortholog 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Ochotona princeps ENSOPRG00000008050 ortholog_one2many 11 retrogenes
retro_opri_1097, retro_opri_1114, retro_opri_115, retro_opri_1196, retro_opri_340, retro_opri_367, retro_opri_626, retro_opri_781, retro_opri_896, retro_opri_910, retro_opri_984,
Pongo abelii ENSPPYG00000001466 possible_ortholog 7 retrogenes
retro_pabe_1216, retro_pabe_1320, retro_pabe_2054, retro_pabe_2292, retro_pabe_3167, retro_pabe_3388, retro_pabe_3502,
Pteropus vampyrus ENSPVAG00000005504 possible_ortholog 7 retrogenes
retro_pvam_1255, retro_pvam_1348, retro_pvam_1391, retro_pvam_145, retro_pvam_405, retro_pvam_76, retro_pvam_971,
Sorex araneus ENSSARG00000007896 possible_ortholog 1 retrogene
retro_sara_559,
Sus scrofa ENSSSCG00000028485 possible_ortholog 3 retrogenes
retro_sscr_1157, retro_sscr_255, retro_sscr_256,
Ictidomys tridecemlineatus ENSSTOG00000000116 possible_ortholog 1 retrogene
retro_itri_1532,
Tupaia belangeri ENSTBEG00000015642 possible_ortholog 9 retrogenes
retro_tbel_1183, retro_tbel_1955, retro_tbel_2347, retro_tbel_2694, retro_tbel_2702, retro_tbel_2961, retro_tbel_3590, retro_tbel_4037, retro_tbel_4478,
Tarsius syrichta ENSTSYG00000006915 possible_ortholog 6 retrogenes
retro_tsyr_1030, retro_tsyr_173, retro_tsyr_2037, retro_tsyr_610, retro_tsyr_840, retro_tsyr_996,
Tursiops truncatus ENSTTRG00000001353 possible_ortholog 2 retrogenes
retro_ttru_461, retro_ttru_746,
Vicugna pacos ENSVPAG00000000068 possible_ortholog 2 retrogenes
retro_vpac_235, retro_vpac_647,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1519 96.77 100.00
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2. retro_ocun_1953 66.67 51.21
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Download FASTA sequences of all ENSOCUG00000028047 retrocopies