RetrogeneDB ID: | retro_eeur_180 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_176554:6..495(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF1 | ||
Ensembl ID: | ENSEEUG00000009255 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 1 [Source:HGNC Symbol;Acc:10780] |
Percent Identity: | 89.7 % |
Parental protein coverage: | 56.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA |
MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYK.GAIRDIDLKN.RGGPP.AFVEFEDPRDAEDA | |
Retrocopy | MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYK*GAIRDIDLKNSRGGPPYAFVEFEDPRDAEDA |
Parental | VYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDH |
VYGR.GYDYDGY.LRVEFPR.GRGT.R.GGGG.GGGAPRG.YGP.S.RSENRVVVSGLPPSG.WQDLKDH | |
Retrocopy | VYGR-GYDYDGYCLRVEFPR-GRGTDRSGGGGAGGGAPRGCYGPLSPRSENRVVVSGLPPSGNWQDLKDH |
Parental | MREAGDVCYADVYRDGTGVVEFVRK |
M.EAGDVCYADVYRD..GVVEFVR. | |
Retrocopy | MCEAGDVCYADVYRDNPGVVEFVRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 91 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 141 .78 RPM |
SRP017611_liver | 0 .00 RPM | 47 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000009255 | 1 retrocopy |
retro_eeur_180 ,
|
Myotis lucifugus | ENSMLUG00000011040 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001234 | 2 retrocopies |