RetrogeneDB ID: retro_mluc_307

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429810:5231154..5231883(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023995
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SRSF1
• Ensembl ID: ENSMLUG00000011040
• Aliases: None
• Description: None

Sequence

>retro_mluc_307
ATGTCCGGAGGTGGTGTGATTCGTGACCGGGCAGGGAACAACGATTGTCGCATCTACGTGGGTAACTTACCTCCAGACAT
TCGAACCAAGGACATTGAGGACGTGTTCTACAAATACGGCGCTATCCGCGACATCGATCTCAAGAATCACCGCAGGGGAC
CACCCTTCGCCTTCGTTGAGTTTGAGGACCCACAAGACGCGGAAGACGCGGTGTATGGTCGCCATGGCTACGATTACGAT
GGATACCGTCTGCGGGTCGAGTTTCCTCGAAGGGGCCGCGGCTGGGGTGGAGGTGGTGGAGCACCCCGAGGCCGCTATGG
CCCCCCATCCAGGCGACCTGAGAACAGAGTGGTTGTCTCTGGACTGCCTCCAAGTGGAAGCTGGCAGGATTTGAAGGATC
ACATGCGTGAAGCAGGTGATGTCTGTTATGCTGATGTTTCCCGAGATGGCACTGGTGTCGTGGAGTTTGTACGGAAAGAA
GATATGACCTATGCAGTTCGAAAACTGGATAACACTAAGTTTAGATCTCATGAGGGAGAAACTGCCTACATCCGCGTGAA
AGCTGATGGGCCCAGAAGTCCAGGTTATGGAAGATCTCGATCTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCA
ACAGCAGGAGTCGCAGTTACTCTCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGATCT
CGTACATAA

Alignment

ORF - retro_mluc_307 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.05 %
• Parental protein coverage: 61.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE
          RG.G.GGGGGAPRGRYGPPSRR.ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV.RDGTGVVEFVRKE
Retrocopy RGRGWGGGGGAPRGRYGPPSRRPENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVSRDGTGVVEFVRKE

Parental  DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR
          DMTYAVRKLDNTKFRSHEGETAYIRVK.DGPRSP.YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR
Retrocopy DMTYAVRKLDNTKFRSHEGETAYIRVKADGPRSPGYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR

Parental  YSPRHSRSRSRT
          YSPRHSRSRSRT
Retrocopy YSPRHSRSRSRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_307 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000009255	1 retrocopy	retro_eeur_180,
Myotis lucifugus	ENSMLUG00000009536	2 retrocopies	retro_mluc_2005, retro_mluc_972,
Myotis lucifugus	ENSMLUG00000010671	6 retrocopies	retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Myotis lucifugus	ENSMLUG00000011040	1 retrocopy	retro_mluc_307 ,
Otolemur garnettii	ENSOGAG00000025950	1 retrocopy	retro_ogar_2848,
Ochotona princeps	ENSOPRG00000001234	2 retrocopies	retro_opri_335, retro_opri_625,