RetrogeneDB ID: | retro_etel_1015 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_200740:12338..13084(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSETEG00000016984 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 94.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVKETTYYDVLGVKPSATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVK.TT..DVLGVKPSATQEELKKAYRKLALKYHPDKNP.EGEKFKQISQAYEVLSDAKKRELYDKGGEQ | |
Retrocopy | MVKDTT--DVLGVKPSATQEELKKAYRKLALKYHPDKNPSEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
Parental | AIKEGGAGGGFGS-PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
AIKE.GAGGGFGS.PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG | |
Retrocopy | AIKERGAGGGFGS<PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
Parental | RGGKKGAV-CCPNCRGTGMPIRIHQIGPGMVQQIKSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE |
RGGKKGA..CCPNCRGTGM.IRIHQIGPGMVQQI.SVCMECQG.GE.ISPKD.CKSCNGRKIVRE.KILE | |
Retrocopy | RGGKKGAIECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGQGEQISPKDKCKSCNGRKIVRE-KILE |
Parental | VHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFT |
VHIDKGMKDGQKITFHGEGDQEPGLEPGDII.VLDQKDHAVFT | |
Retrocopy | VHIDKGMKDGQKITFHGEGDQEPGLEPGDIILVLDQKDHAVFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007589 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000001818 | 23 retrocopies |
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
|
Echinops telfairi | ENSETEG00000004320 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016984 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000007030 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003384 | 7 retrocopies | |
Mustela putorius furo | ENSMPUG00000004231 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000012366 | 1 retrocopy |