RetrogeneDB ID: retro_mputfur_1543

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897227.1:22612..23271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000004231
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1543
ATGGTGAAAGAAACCACTTACTATGATGTTTGGGCATCAAACCCAATGCCACCCAAGAAGAATTGAAAAAGGCCCACAGG
AAACTGACCTTGAAGTACCACCCTGGTAAGAAACCAAATGAAGGAGAGAAGTTTAAACAGACATCTCAGGCTTAGGAATT
ACTCTCTGATGCAAAGAAAAGGGAATTACATGACAAAGGAGGTGAACAGGCAGTTAAAGAAGGTAGACCCAGTGGTGACT
TTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAAGAATGCAGAGTGAAAGGAGAGGTAAAAATGTCCTG
TATCAGCCCTCAGTAACCTTAGACGATTTATATAATGGTGCAACAAGAAAACTGGCTCTGCAAAAGAACGTGATATGCGA
TAAATGTGAAAGTTGAGGTAGTAAGAAAGGAGCAGTCGAATGTTGTCCCAATTGCCGATGTACTGAAATGCAAATAAGAA
TTCATCAGATAGGACCTGGAATGGTTCAGCACATTCAATCTGTGTGCATGGAGTGCCAGGGCCATGGGGATCGGATCAGA
CCTAAAGATAGATGTAAAAGCTGCAATGGAAGGAAGATAGTTAGAGAGAAGATTCTAGAAGTTCATATTGACAAAGGCAT
GAAAGATGGCCAGAAGATG

Alignment

ORF - retro_mputfur_1543 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.1 %
• Parental protein coverage: 66.47 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVKETTYYDV-LGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE
          MVKETTYYDV.LG.KPNATQEELKKA.RKL.LKYHP.K.PNEGEKFKQ.SQA.E.LSDAKKREL.DKGGE
Retrocopy MVKETTYYDV<LGIKPNATQEELKKAHRKLTLKYHPGKKPNEGEKFKQTSQA*ELLSDAKKRELHDKGGE

Parental  QAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG
          QA.KEG...G.FGSPMDIFDMFFGGG.RMQ.ERRGKNV..Q.SVTL.DLYNGATRKLALQKNVICDKCE.
Retrocopy QAVKEGRPSGDFGSPMDIFDMFFGGG-RMQSERRGKNVLYQPSVTLDDLYNGATRKLALQKNVICDKCES

Parental  RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE
          .G.KKGAVECCPNCR.T.MQIRIHQIGPGMVQ.IQSVCMECQGHG.RI.PKDRCKSCNGRKIVRE.KILE
Retrocopy *GSKKGAVECCPNCRCTEMQIRIHQIGPGMVQHIQSVCMECQGHGDRIRPKDRCKSCNGRKIVRE-KILE

Parental  VHIDKGMKDGQKI
          VHIDKGMKDGQK.
Retrocopy VHIDKGMKDGQKM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1543 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1543 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 103 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007589	4 retrocopies	retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus	ENSBTAG00000016265	6 retrocopies	retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Canis familiaris	ENSCAFG00000001818	23 retrocopies	retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Choloepus hoffmanni	ENSCHOG00000000631	9 retrocopies	retro_chof_1760, retro_chof_186, retro_chof_2020, retro_chof_2541, retro_chof_2694, retro_chof_287, retro_chof_417, retro_chof_498, retro_chof_946,
Dasypus novemcinctus	ENSDNOG00000018342	3 retrocopies	retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Echinops telfairi	ENSETEG00000016984	6 retrocopies	retro_etel_1015, retro_etel_1454, retro_etel_1751, retro_etel_219, retro_etel_482, retro_etel_623,
Homo sapiens	ENSG00000086061	4 retrocopies	retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla	ENSGGOG00000007030	3 retrocopies	retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Monodelphis domestica	ENSMODG00000003384	7 retrocopies	retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mustela putorius furo	ENSMPUG00000004231	2 retrocopies	retro_mputfur_1543 , retro_mputfur_487,
Pongo abelii	ENSPPYG00000019141	4 retrocopies	retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes	ENSPTRG00000020852	4 retrocopies	retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Sarcophilus harrisii	ENSSHAG00000012366	1 retrocopy	retro_shar_762,
Tupaia belangeri	ENSTBEG00000000596	23 retrocopies	retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tursiops truncatus	ENSTTRG00000007387	4 retrocopies	retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,