RetrogeneDB ID: | retro_etel_1056 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_205027:8342..8588(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS1 | ||
Ensembl ID: | ENSETEG00000004020 | ||
Aliases: | None | ||
Description: | signal peptidase complex subunit 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:23401] |
Percent Identity: | 68.24 % |
Parental protein coverage: | 92.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QKLAEQLFQVIILFSAIVG-FVYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRR-HPLKWLPVQDSG |
QKLAEQ.FQ.I.LF......F.YGYV.EQ.GWTVYI.MAGF.FSCLLT..PWPIY....PLKWLP..DS. | |
Retrocopy | QKLAEQMFQEI-LFFSAIV>FIYGYVTEQVGWTVYISMAGFDFSCLLTRLPWPIYCQ<APLKWLPSHDSE |
Parental | TEDKKPGDRKIKRHA |
.EDKKP.D.KIKRH. | |
Retrocopy | MEDKKPRDQKIKRHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000012421 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000000678 | 4 retrocopies | |
Equus caballus | ENSECAG00000023559 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007914 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004020 | 1 retrocopy |
retro_etel_1056 ,
|
Loxodonta africana | ENSLAFG00000016073 | 2 retrocopies | |
Mus musculus | ENSMUSG00000021917 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007380 | 1 retrocopy |