RetrogeneDB ID: | retro_etel_1077 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_207299:3530..4347(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO2 | ||
Ensembl ID: | ENSETEG00000007582 | ||
Aliases: | None | ||
Description: | enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353] |
Percent Identity: | 79.27 % |
Parental protein coverage: | 62.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AGNKLAMQEFMILPVGAESFRDAMRLG-AEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELV |
A.NKLAMQEFMILPVGA..F..AMR.G.AEVYH.LK.VIK.KYGKDATNVGDEGGFAPNILEN.EALEL. | |
Retrocopy | ASNKLAMQEFMILPVGAANFQEAMRIG<AEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELL |
Parental | KEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPPDPS-RCITGDQLGSLYQDFVRNYPVVSIEDPF |
K.AI.KAGYT.K.VIGMD.AASE..R.GKY.LDF.SP.DPS...I..DQL..LY..F...YPVVSIEDPF | |
Retrocopy | KNAIGKAGYTDKVVIGMDLAASESFRPGKYGLDFQSPDDPS<QYISPDQLADLYKSFITDYPVVSIEDPF |
Parental | DQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWG |
DQDDW.AW.KFTA..GIQ.VGDDLTVTNPKRI..AV.EK.C.CLLLKVNQIGS.TE...ACKLAQ.NGWG | |
Retrocopy | DQDDWDAWAKFTASSGIQLVGDDLTVTNPKRIAKAVGEKSCSCLLLKVNQIGSMTESLPACKLAQSNGWG |
Parental | VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGGEARFAGHNFRNP |
VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ..RIEEELG..A.FAG..FRNP | |
Retrocopy | VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEEELGSKAKFAGLKFRNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014523 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007582 | 8 retrocopies |
retro_etel_1077 , retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227, retro_etel_286, retro_etel_30, retro_etel_544,
|
Felis catus | ENSFCAG00000004282 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001774 | 1 retrocopy |