RetrogeneDB ID: retro_mmur_362

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2608:49577..50267(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENO2
• Ensembl ID: ENSMICG00000001774
• Aliases: None
• Description: enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353]

Sequence

>retro_mmur_362
ATGGCCATGCAGAAAATCTTTGCCCGGGAAATCCTGGACTCCAGGGGCAACCCCACCGTGGAGGTGGATCTGTACACAGG
TAAGGGCCGATTTCGAGCAGCTGTGCCCAGTGGGGCTTCCACAGGCATCTATGAAGCTCTGGAACTAAGAGATGGAGACA
AATCCCGCTACCTGGGGAAAGGAGTCCTGAAGGCTGTGGAACACATCAACAAGACTCTAGGCCCCGCTCTGCTGGAAAAG
AAACTAAGCGTTGTGGATCAAGAAAAAGTTGACAAATTTATGATTGGGCTGGATGGAACCGAGAATAAGTCCAAGTTTGG
GGCCAATGCCATCCTGGGCGTGTCCTTGGCCGTGTGTAAGGCAGGAGCAGCTGAGAAGGGGGTCCCACTCTACCGACACA
TCGCATATCTCGCGGGGAACCCTGACCTCATACTCCCAGTGCCTGCTTTCAATGTGATCAATGGGGGTTCCCATGCTGGA
AACAAGCTGGCCATGCAGGAGTTCATGATTCTGCCCGTGGGAGCCAGCTCCTTCAAGGAGGCCATGCGCATTGGAGCCGA
GGTCTACCACCACCTCAAGGGGGTCATCAAGTCCAAGTATGGGAAGGATGCCACCAACGTGGGTGATGAGGGCGGCTTTG
CACCCAACATCCTGGAGAACAATGAGGCCCTGGAGCTGCTGAAGACAGCC

Alignment

ORF - retro_mmur_362 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.35 %
• Parental protein coverage: 53.12 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSIEKIWSREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHIN
          M...KI..REILDSRGNPTVEVDLYT.KG.FRAAVPSGASTGIYEALELRDGDK.RYLGKGVLKAV.HIN
Retrocopy MAMQKIFAREILDSRGNPTVEVDLYTGKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEHIN

Parental  TTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERDLPLYRHIAQLAGN
          .T..PAL....LSVV.QEK.D..M..LDGTENKSKFGANAILGVSLAVCKAGAAE...PLYRHIA.LAGN
Retrocopy KTLGPALLEKKLSVVDQEKVDKFMIGLDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIAYLAGN

Parental  SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDE
          .DLILPVPAFNVINGGSHAGNKLAMQEFMILPVGA.SF..AMR.GAEVYH.LKGVIK.KYGKDATNVGDE
Retrocopy PDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKSKYGKDATNVGDE

Parental  GGFAPNILENSEALELVKEA
          GGFAPNILEN.EALEL.K.A
Retrocopy GGFAPNILENNEALELLKTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_362 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_362 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014523	1 retrocopy	retro_cfam_320,
Echinops telfairi	ENSETEG00000007582	8 retrocopies	retro_etel_1077, retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227, retro_etel_286, retro_etel_30, retro_etel_544,
Felis catus	ENSFCAG00000004282	1 retrocopy	retro_fcat_1423,
Microcebus murinus	ENSMICG00000001774	1 retrocopy	retro_mmur_362 ,