RetrogeneDB ID: | retro_etel_1176 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_223260:8424..8832(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAP18 | ||
Ensembl ID: | ENSETEG00000005565 | ||
Aliases: | None | ||
Description: | Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530] |
Percent Identity: | 92.65 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KPIDREKKCPLLLRVLTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHF |
..IDREK.CPLLLRV.TT.NGRHH.MDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHF | |
Retrocopy | RSIDREKMCPLLLRVFTTTNGRHH*MDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHF |
Parental | NFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY |
.FAIVFTDLKR.GYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPN.APP.SGRMRPY | |
Retrocopy | HFAIVFTDLKRSGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNWAPPSSGRMRPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |