Parental gene:

SAP18, ENSCJAG00000018645

Aliases:None
Description:Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:134481954..134492799(+)


>ENSCJAG00000018645
ATGCTCGCTGCAGGGGTCGGAGGTCAGGGCGAGCGTCTCGCGGGCCGCAGGAGGAAGATGGCGGTGGAATCGCGCGTTAC
CCAGGAGGAAATTAAGAAGGAGCCAGAGAAGCCGATCGACCGCGAGAAGACATGCCCGCTGCTGCTGCGGGTTTTCACCA
CCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAACGTACCATCCAGCGAGTTGCAGATCTACACTTGG
ATGGATGCAACTTTGAAAGAACTGACAAGCTTAGTAAAGGAAGTCTACCCAGAAGCTCGAAAGAAGGGCACTCACTTCAA
TTTTGCAATCGTTTTTACAGATGTTAAAAGACCTGGCTATCGAGTTAAGGAGATTGGCAGCACCATGTCTGGCAGAAAGG
GGACTGATGATTCCATGACGCTGCAGTCGCAGAAGTTCCAGATAGGCGATTACTTGGACATAGCAATTACCCCTCCAAAT
CGGGCACCCCCTCCTTCAGGGCGCATGAGACCATATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 33 .66 RPM
SRP051959_skeletal_muscle 44 .62 RPM
SRP051959_lymph_node 27 .28 RPM
SRP051959_lung 30 .84 RPM
SRP051959_liver 40 .48 RPM
SRP051959_kidney 37 .72 RPM
SRP051959_heart 29 .29 RPM
SRP051959_colon 25 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018631 ortholog_one2one 1 retrogene
retro_btau_1443,
Canis familiaris ENSCAFG00000032070 ortholog_one2one 3 retrogenes
retro_cfam_561, retro_cfam_733, retro_cfam_979,
Cavia porcellus ENSCPOG00000008598 ortholog_one2one 1 retrogene
retro_cpor_897,
Dasypus novemcinctus ENSDNOG00000015204 ortholog_one2one 3 retrogenes
retro_dnov_1027, retro_dnov_119, retro_dnov_1600,
Equus caballus ENSECAG00000013508 ortholog_one2one 1 retrogene
retro_ecab_321,
Erinaceus europaeus ENSEEUG00000006309 ortholog_one2many 1 retrogene
retro_eeur_674,
Echinops telfairi ENSETEG00000005565 ortholog_one2one 11 retrogenes
retro_etel_1176, retro_etel_1379, retro_etel_1411, retro_etel_1716, retro_etel_1811, retro_etel_262, retro_etel_456, retro_etel_708, retro_etel_879, retro_etel_891, retro_etel_98,
Felis catus ENSFCAG00000007026 ortholog_one2one 1 retrogene
retro_fcat_1450,
Homo sapiens ENSG00000150459 ortholog_one2one 2 retrogenes
retro_hsap_2186, retro_hsap_2759,
Loxodonta africana ENSLAFG00000030963 ortholog_one2one 2 retrogenes
retro_lafr_338, retro_lafr_358,
Microcebus murinus ENSMICG00000004309 ortholog_one2one 2 retrogenes
retro_mmur_1092, retro_mmur_1312,
Myotis lucifugus ENSMLUG00000002852 ortholog_one2one 4 retrogenes
retro_mluc_1903, retro_mluc_2197, retro_mluc_2239, retro_mluc_407,
Macaca mulatta ENSMMUG00000010416 ortholog_one2one 2 retrogenes
retro_mmul_465, retro_mmul_914,
Mustela putorius furo ENSMPUG00000000607 possible_ortholog 1 retrogene
retro_mputfur_35,
Mus musculus ENSMUSG00000021963 ortholog_one2many 1 retrogene
retro_mmus_82,
Nomascus leucogenys ENSNLEG00000001995 ortholog_one2one 2 retrogenes
retro_nleu_2922, retro_nleu_315,
Oryctolagus cuniculus ENSOCUG00000012716 ortholog_one2one 1 retrogene
retro_ocun_915,
Otolemur garnettii ENSOGAG00000010062 ortholog_one2one 2 retrogenes
retro_ogar_2213, retro_ogar_650,
Pongo abelii ENSPPYG00000005198 ortholog_one2one 2 retrogenes
retro_pabe_2066, retro_pabe_2253,
Pan troglodytes ENSPTRG00000005692 ortholog_one2one 2 retrogenes
retro_ptro_1664, retro_ptro_1866,
Rattus norvegicus ENSRNOG00000010732 ortholog_one2many 1 retrogene
retro_rnor_163,
Sorex araneus ENSSARG00000004923 ortholog_one2one 3 retrogenes
retro_sara_232, retro_sara_471, retro_sara_743,
Ictidomys tridecemlineatus ENSSTOG00000005735 ortholog_one2one 3 retrogenes
retro_itri_1114, retro_itri_1382, retro_itri_1627,
Tursiops truncatus ENSTTRG00000016912 ortholog_one2one 3 retrogenes
retro_ttru_115, retro_ttru_1453, retro_ttru_381,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1601 75.00 62.21
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2. retro_cjac_2804 80.00 86.63
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3. retro_cjac_2935 85.71 92.44
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Download FASTA sequences of all ENSCJAG00000018645 retrocopies