RetrogeneDB ID:

retro_etel_1291

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_24280:3894..4539(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000002062
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1291
GGGCTCTGTGACCTCTGCCCCGGCCTGGAGAAACAACTGCTCGTGTTCCCGGGACACAGGTGCGGCAGTCTGCAGCTGGT
GGACCTGGCGCACGCAAACCCTGGGACTTCGTCCGCGCCGTCTGCCATCCACGCGCATCAGAGCGAGCTAGCCTGCGTGT
CCCTGAACCAGCCAGGCACGGTAGTGGCCTCCGCCTCCCAGAAGGGCACCCTTATTCGTCTTTTTGACACACAGTCCAAG
GAGAAACTGGTGGAACTGCGCCGAGGCGCCGACCCGGCCACCATTTACTGCATCAACTTCAGCCATGACTCCTCCTTCCT
CTGCGCCTCCAGCGATAAGGGCACGGTCCACATCTTTGCTCTCAAGGACACCCGCCTCAACCGCCGCTCAGCGCTGGCTC
GTGTGGGCAAGGTGGGGCCTCTCATTGGGCAGTACGTGGACTCTCAGTGGAGCCTGGCAAGCTTCACGGTGCCTGCAGAG
TCTGCCTGCATCTGCGCCTTTGGACGCAATACTTCCCAGAATGTCAACTCCGTCATTGCCATCTGTGTAGATGGGACGTT
CCACAAATACGTCTTCACTCCGAATGGAAACTGCAACAGGGAGGCTTTTGAGGTGTACCTTGACATCTGTGATGATGATG
ACTTT

ORF - retro_etel_1291 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.56 %
Parental protein coverage: 65.95 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGT
GLCDLCP.LEKQLLVFPGH.CGSLQLVDLA...PGTSSAP..I.AHQS..ACVSLNQPGTVVASASQKGT
RetrocopyGLCDLCPGLEKQLLVFPGHRCGSLQLVDLAHANPGTSSAPSAIHAHQSELACVSLNQPGTVVASASQKGT
ParentalLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGP
LIRLFDTQSKEKLVELRRG.DPAT.YCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGP
RetrocopyLIRLFDTQSKEKLVELRRGADPATIYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGP
ParentalMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDIC
.IGQYVDSQWSLASFTVPAESACICAFGRNTS.NVNSVIAICVDGTFHKYVFTP.GNCNREAF.VYLDIC
RetrocopyLIGQYVDSQWSLASFTVPAESACICAFGRNTSQNVNSVIAICVDGTFHKYVFTPNGNCNREAFEVYLDIC
ParentalDDDDF
DDDDF
RetrocopyDDDDF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1291 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG00000002062 3 retrocopies
retro_etel_1291 , retro_etel_688, retro_etel_712,
Gorilla gorilla ENSGGOG000000005891 retrocopy
Macaca mulatta ENSMMUG000000106201 retrocopy
Pongo abelii ENSPPYG000000203331 retrocopy



Copyright © RetrogeneDB 2014-2017