RetrogeneDB ID: | retro_etel_1527 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_276992:2280..2606(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MGST3 | ||
Ensembl ID: | ENSETEG00000003507 | ||
Aliases: | None | ||
Description: | microsomal glutathione S-transferase 3 [Source:HGNC Symbol;Acc:7064] |
Percent Identity: | 71.05 % |
Parental protein coverage: | 94.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RAEMAVLSKEYGFVVLTGAASFIMVAHLAINV-AKARKKYK-VEYPTMYSTDPENGHLFNCIQRAHQNTL |
RA.M.VLSKEYGF.VLTG..SF.MVAHLAI....KA.KK...VEYPTM.STD..N.HLFN.IQ.AHQNT. | |
Retrocopy | RAQMVVLSKEYGFAVLTGSSSFEMVAHLAIRG<SKAPKKLR<VEYPTMHSTDLDNRHLFNSIQ*AHQNTW |
Parental | EVYPPFLFFLAVGGVYHPRIVSGLGLAWIVG-RVLYA-YGYYTG |
EVYP.FL.FLA.GGVYH..IVSGL.L.WIVG..V.YA.YGY.TG | |
Retrocopy | EVYPHFLHFLASGGVYHLNIVSGLDLVWIVG<GVVYA<YGYSTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006658 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013353 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012723 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000003507 | 3 retrocopies |
retro_etel_1328, retro_etel_1527 , retro_etel_1544,
|
Mustela putorius furo | ENSMPUG00000003817 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026688 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010376 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000015774 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004245 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005299 | 2 retrocopies |