RetrogeneDB ID: retro_etel_1656

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_285837:84067..84429(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000010851
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000007762
• Aliases: None
• Description: None

Sequence

>retro_etel_1656
CTAAAGAATGGCGAGACATACGACGCTCCCTGGTGAGCTGTGGCAGCTGCATGAACATCAGCCTGCGGGAGGGCATCTGC
ACATCCCAGGATGGAGACAAGTTCTAGCAAATGCCAGCGTGCTCTAGCTGTGGCAGCACCATCAAGTACCTGTGCATCCC
TGACGAGATCATCGATATGGTCAAGGACGAGGTGGTGGCCAAGGGCCACGGCCAGGCTGGCCGACAACAGCAGAAGCAGC
GGAAAGGCTGTGGCATGGCTGGTGTTGGCCGAGGTGTGTTTGGTGGCCGTGGCCTTGGCAGGATCCCCGGCACAGGCAGG
GGCCAACCGGGGAAGAAGCCAGGCCAACAGGTAGGCAAGCAG

Alignment

ORF - retro_etel_1656 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.59 %
• Parental protein coverage: 97.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LKNGETYNG-HLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKDEVVAKG
          LKNGETY....LVSC...MNI.LRE.ICTS.DGDKF..MP.C...GSTIKYL.IPDEIIDMVKDEVVAKG
Retrocopy LKNGETYDA<SLVSCGSCMNISLREGICTSQDGDKF*QMPACSSCGSTIKYLCIPDEIIDMVKDEVVAKG

Parental  RGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQQEKKPGRQAGKQ
          .G..G.QQQKQ.KG.GM.G.GRGVFGGRG.G.IPGTGRGQ..KKPG.Q.GKQ
Retrocopy HGQAGRQQQKQRKGCGMAGVGRGVFGGRGLGRIPGTGRGQPGKKPGQQVGKQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1656 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014900	1 retrocopy	retro_cfam_1954,
Echinops telfairi	ENSETEG00000007762	2 retrocopies	retro_etel_1656 , retro_etel_51,
Latimeria chalumnae	ENSLACG00000015861	1 retrocopy	retro_lcha_28,
Myotis lucifugus	ENSMLUG00000004010	1 retrocopy	retro_mluc_832,