RetrogeneDB ID: | retro_etel_1830 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_304529:3086..3342(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HYPK | ||
Ensembl ID: | ENSETEG00000007464 | ||
Aliases: | None | ||
Description: | huntingtin interacting protein K [Source:HGNC Symbol;Acc:18418] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 61.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIGDRRS-REQKAKQER-EKELAKVTIKKEDLEL |
P..P.K...GAADL...TDYAE.KEIQSS.LE.A.S..GDRR..R..K....R.EKELAK.TI.KE.LEL | |
Retrocopy | PKRPWKPYRGAADLKGDTDYAEKKEIQSSDLERAKSMTGDRRN<RDRKPNWDR<EKELAKDTIGKEALEL |
Parental | IMTEMEISRAAAERSLRE |
IMT..EI.RA.AERSL.E | |
Retrocopy | IMTAVEIARATAERSLQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002541 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007464 | 3 retrocopies |
retro_etel_1504, retro_etel_1616, retro_etel_1830 ,
|
Gorilla gorilla | ENSGGOG00000014809 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013059 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017744 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005454 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001161 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010201 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006424 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000038721 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015703 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006916 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003726 | 1 retrocopy |